View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_17 (Length: 539)
Name: NF16533_high_17
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_17 |
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| [»] scaffold0009 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Original strand, 47543698 - 47544202
Alignment:
| Q |
13 |
atgtagtacatgcctcatatttaatttctggcttactgtatttcaattatcatcaaagttggatttactatgcagtattaatgttatcttcttctaatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47543698 |
atgtagtacatgcctcatatttaatttctggcttactgtatttcaattatcatcaaagttggatttactatgcagtattaatgttatcttcttctaatat |
47543797 |
T |
|
| Q |
113 |
tcctggaaatagggatcttctggcaaatttcaggagcctgaaattggaccacagacatctgatccttatgaacttggacttcagcctactgtaaaaggtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
47543798 |
tcctggaaatagggatcttctggcaaatttcaggagcctgaaattggaccacagacatctgatccttatgaacttggacttcatcctactgcaaaaggtt |
47543897 |
T |
|
| Q |
213 |
tgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaacatttgcatgggaaatttataaaagttatccgtcttttgtattttatttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47543898 |
tgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaacatttgcatgggaaatttataaaagttatccgtcttttgtattttatttat |
47543997 |
T |
|
| Q |
313 |
ctgtagagtgtggccctgctggagctccttccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagc |
412 |
Q |
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| T |
47543998 |
ctgtagagtgtggccctgctggagctccttccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagc |
47544097 |
T |
|
| Q |
413 |
tgatcagggagaggttaatatgaatggagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgtttcacatac |
512 |
Q |
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| T |
47544098 |
tgatcagggagaggttaatatgaatagagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgtttcacatac |
47544197 |
T |
|
| Q |
513 |
gacat |
517 |
Q |
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||||| |
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| T |
47544198 |
gacat |
47544202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 445
Target Start/End: Original strand, 47527660 - 47527761
Alignment:
| Q |
338 |
tccttccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaat |
437 |
Q |
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||||| ||||||| ||||||| | ||||||| |||| |||||| ||||||||||| |||||||| ||| ||| |||| |||||| ||||||||||| |
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| T |
47527660 |
tccttgcatgccaaagaaaccagctgttaca---atcaagtcaacaacaagtggatcatcagacgatgaggaaggtgat---ggagagattaatatgaat |
47527753 |
T |
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| Q |
438 |
ggagacaa |
445 |
Q |
| |
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|||||||| |
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| T |
47527754 |
ggagacaa |
47527761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 10266952 - 10266914
Alignment:
| Q |
261 |
acatttgcatgggaaatttataaaagttatccgtctttt |
299 |
Q |
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| T |
10266952 |
acatttgcatgggaaatttataaaagttatccgtatttt |
10266914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 47527413 - 47527481
Alignment:
| Q |
123 |
agggatcttctggcaaatttcaggagcctgaaattggaccacagacatctgatccttatgaacttggac |
191 |
Q |
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||||||||| | ||||| |||||| ||||| | |||| ||||| ||||| |||||||||||||||||| |
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| T |
47527413 |
agggatctttggtcaaatctcaggatcctgataatggatcacagccatcttatccttatgaacttggac |
47527481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 465
Target Start/End: Original strand, 101322 - 101431
Alignment:
| Q |
353 |
gaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataaccct |
452 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||||||||||||| ||| || |
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| T |
101322 |
gaaacctgttgttacaac---caggtcaacgacaagtggatcctcaggcgaagatgaggcttatcaaggagagattaatatgaatggagacaagaacgct |
101418 |
T |
|
| Q |
453 |
tccgatgcaaaac |
465 |
Q |
| |
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|| |||||||||| |
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| T |
101419 |
tctgatgcaaaac |
101431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 101155 - 101273
Alignment:
| Q |
13 |
atgtagtacatgcctcatatttaatttctggcttactgtatttcaattatcatc---aaagttggatttactatgcagtattaatgttatcttcttctaa |
109 |
Q |
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|||| |||||| |||||||||| | || |||||||||||||||| ||||| || |||||| ||| | |||||||||| ||||||| ||||||||||| |
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| T |
101155 |
atgtggtacatacctcatattttacttttggcttactgtatttctattatattctttaaagtttgatatgctatgcagtactaatgttttcttcttctaa |
101254 |
T |
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| Q |
110 |
tattcctggaaatagggat |
128 |
Q |
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||||| ||||||||||||| |
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| T |
101255 |
tattcatggaaatagggat |
101273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 101283 - 101323
Alignment:
| Q |
150 |
ctgaaattggaccacagacatctgatccttatgaacttgga |
190 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| |
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| T |
101283 |
ctgatattggaccacagacatctgatccttctgaacttgga |
101323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 515
Target Start/End: Original strand, 101435 - 101466
Alignment:
| Q |
484 |
attctaggagttcaatatgtttcacatacgac |
515 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
101435 |
attctaggagttcaatatgtttcacatacgac |
101466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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