View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_high_18 (Length: 531)
Name: NF16533_high_18
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 40678565 - 40678999
Alignment:
| Q |
15 |
cataggaagagacaattggcaatggagttgttagagaaagagaatttgtattatgaaaatgtgatggagctagaggattatgaagagagtggtggaggag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678565 |
cataggaagagacaattggcaatggagttgttagagaaagagaatttgtattatgaaaatgtgatggagctagaggattatgaagagagtggtggaggag |
40678664 |
T |
|
| Q |
115 |
agagttctatgggattggaggaggataatgctggtcatggttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaaggagcagttaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678665 |
agagttctatgggattggaggaggataatgctagtcatggttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaaggagcagttaa |
40678764 |
T |
|
| Q |
215 |
aaaggtgacaatgatccctgatagtagcagtttaaagatgcccaagatgtttaagccaactatgcctgatttctcaacatttcatgaagattaattaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678765 |
aaaggtgacaatgatccctgatagtagcagtttaaagatgcccaagatgtttaagccaactatgcctgatttctcaacatttcatgaagattaattaatt |
40678864 |
T |
|
| Q |
315 |
agttttgaagtctcatgaggactgaattatgaatgaggacaaaagtaatgcttg--------------atttgtatctaactagttgtacagaagcaatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40678865 |
agttttgaagtctcatgaggactgaattatgaatgaggacaaaagtaatgcttgatttgtgtttcttaatttgtatctaactagttgtacagaagcaatg |
40678964 |
T |
|
| Q |
401 |
atattttgtctcccgatt-ctttgattcccaccaa |
434 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |
|
|
| T |
40678965 |
atattttgtctccctattcctttgattcccaccaa |
40678999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 431 - 515
Target Start/End: Original strand, 40679042 - 40679126
Alignment:
| Q |
431 |
ccaaccatgagaatgcagcaatgttaaatctcttgagtgagagatttgttatttattgtattacctagttcaatgatttagtctt |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40679042 |
ccaaccatgagaatgcagcaatgttaaatctcttgagtgagagatttgttatttattgtattatctagttcaatgatttagtctt |
40679126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 3765294 - 3765334
Alignment:
| Q |
432 |
caaccatgagaatgcagcaatgttaaatctcttgagtgaga |
472 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
3765294 |
caaccctgagaatgcagcagtgttaaatctcttgagggaga |
3765334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 13112079 - 13112029
Alignment:
| Q |
155 |
ttttggtgctacatttttggcttcaaaatttgctgcaaacactaagaaagg |
205 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| || |||||||| |
|
|
| T |
13112079 |
ttttggtgctactgttttggcttcaagatttgctgcaaatacaaagaaagg |
13112029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University