View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_2 (Length: 708)
Name: NF16533_high_2
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 7 - 691
Target Start/End: Complemental strand, 37037271 - 37036609
Alignment:
| Q |
7 |
tgtcgaagaaaatgataccaaatatcgtttctctttttaagaatgtcaaactttttcattaccaatgcacgattagactaactttctagatactaagtta |
106 |
Q |
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||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
37037271 |
tgtcgaaaaatatgatac-aaatatcgtttctctttttaaaaatgtcaaactttttcattaccaatgcacgattagactaactttcaagatactagttta |
37037173 |
T |
|
| Q |
107 |
acatttcccattaaaatataatcttatcctataattaagatagtagtagcatatatagcagtagcacacttctctgttctccaaagaatctcaaatataa |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37037172 |
acatttcccattaaaatataatcttaccctataattaagatagtag---catatatagcagtagcacacttctctgttctccaaagaatctcaaatataa |
37037076 |
T |
|
| Q |
207 |
taatcttgctcttattcttctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37037075 |
taatcttgctcttattcttctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttc |
37036976 |
T |
|
| Q |
307 |
aaagagcaatagacctcttgattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37036975 |
aaagagcaatagacctcttgattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacaattccatggtt |
37036876 |
T |
|
| Q |
407 |
tcttgcattctcatgtgaatcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37036875 |
tcttgcattctcatgtgaatcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctc |
37036776 |
T |
|
| Q |
507 |
cttcaacggtatgtaatataaactctcgtgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaattgatgcaactcatcaaga |
606 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37036775 |
cttcaacggtatgcaatataaactctcgcgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaatcgatgcaactcatc---- |
37036680 |
T |
|
| Q |
607 |
gttgcagcgacatcaagattgatatcaaaattaatcttgatgttgcagtttatgccggtcgctgttaacaacatttccatgaagt |
691 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37036679 |
--------------aagattgatatcaaaattaatcttgatgttgcagtttatgccggtcgctgttaacaacatttccatgaagt |
37036609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 243 - 560
Target Start/End: Complemental strand, 37046729 - 37046427
Alignment:
| Q |
243 |
tgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttcaaagagcaatagacctcttgattctactccttttat |
342 |
Q |
| |
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|||||||||| |||||||||||||||| ||| || |||||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||| ||| |
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| T |
37046729 |
tgcagaatggcaaaccaagaaaatctccctctgtatgaaaaaatatggatcaaacgaacatttcaaagagcaatagatatcttgattttactcctcctat |
37046630 |
T |
|
| Q |
343 |
tttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtttcttgcattctcatgtgaatcttggttcacatatac |
442 |
Q |
| |
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| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37046629 |
tctctcttctttgttaccgtat---------------caacgtcaccttcacaattccatggtttcttgcattctcatgtgaatcttggttcacatatac |
37046545 |
T |
|
| Q |
443 |
ttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgtgtcacga |
542 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37046544 |
ttggattattcttctcaacaccaaatggagtcctgctgttaacaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgcgtcacga |
37046445 |
T |
|
| Q |
543 |
tatttgatattcttataa |
560 |
Q |
| |
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||||||||||| |||||| |
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|
| T |
37046444 |
tatttgatattattataa |
37046427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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