View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_26 (Length: 494)
Name: NF16533_high_26
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_26 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 31041570 - 31042042
Alignment:
| Q |
16 |
atatagaacatggataagacccttttccatgaaaacaaatgggatataaccctctatttctagtaacaatgtaaccttagacttcgtaaaagaaatgtaa |
115 |
Q |
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| T |
31041570 |
atatagaacatggataagacctttttccatgaaaacaaatgggatataaccctctatttctagtaacaatgtaaccttagacttcgtaaaagaaatgtaa |
31041669 |
T |
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| Q |
116 |
cagaagacaattttcatcatgggtctaagattatggtctacacccttattcatttagactaaacttaggtgtccaaagcctatcacaaatgagcgttact |
215 |
Q |
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| T |
31041670 |
cagaagacaattttcatcatgggtctaagattatggtctacacccttattcatttagactaaacttaggtgtccaaagcctatcacaaatgagcgttact |
31041769 |
T |
|
| Q |
216 |
tttttgacctcccataaatatgcaaaccgtttggaagataacttttgaacgatattttttgtgtttttaaaggctccaaaagataactcctgaatgttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31041770 |
tttttgacctcccataaatatgcaaaccgtttggaagataacttttgaacgatattttttgtgtttttaaaggctccaaaagataactcctgaatgttgt |
31041869 |
T |
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| Q |
316 |
tttttagaagaaagaacaaatatgaaagccaagagagcaaccatcattacaataatattgtagggtctgaatatcattaaaattaaatggaccaaaatta |
415 |
Q |
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| T |
31041870 |
tttttagaagaaagaacaaatatgaaagccaagagagcaaccatcattacaataatattgtacggtctcaatatcatcaaaattaaatggaccaaaatta |
31041969 |
T |
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| Q |
416 |
acattagcccattttgaaaaagtacaaaatcataatcatttgtagtatataagattatattatttcttctctg |
488 |
Q |
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| T |
31041970 |
acattagcccattttgaaaaagtacaaaatcataatcaattgtagtatataagattatattatttcttttctg |
31042042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 25749515 - 25749586
Alignment:
| Q |
266 |
gatattttttgtgtttttaaaggctccaaaagataactcctgaatgttgttttttagaagaaagaacaaata |
337 |
Q |
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| T |
25749515 |
gatattttttatgtttttgaaagcttcgaaagataactctcaaatgttgttttttagaataaagagcaaata |
25749586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 48229779 - 48229745
Alignment:
| Q |
254 |
taacttttgaacgatattttttgtgtttttaaagg |
288 |
Q |
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| T |
48229779 |
taacttttgaacgatattttttgtgttttaaaagg |
48229745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 38959515 - 38959556
Alignment:
| Q |
245 |
tttggaagataacttttgaacgatattttttgtgtttttaaa |
286 |
Q |
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| T |
38959515 |
tttggaagataacttgcgaacaatattttttgtgtttttaaa |
38959556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 16962 - 17032
Alignment:
| Q |
253 |
ataacttttgaacgatatttt-ttgtgtttttaaaggctccaaaagataactcctgaatgttgttttttag |
322 |
Q |
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| T |
16962 |
ataacttttgaacggtattttattttatttttaaaggattcggaagataacttctgaatgttgttttttag |
17032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 30316593 - 30316540
Alignment:
| Q |
271 |
tttttgtgtttttaaaggctccaaaagataactcctgaatgttgttttttagaa |
324 |
Q |
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| T |
30316593 |
tttttgtgtttttaaaggtttcaaaaaataacttctaaatattgttttttagaa |
30316540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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