View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_27 (Length: 488)
Name: NF16533_high_27
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 43076212 - 43076669
Alignment:
| Q |
12 |
agtgagatgaaccaaaacaaaaaatattaaaagaacaattttatgaacaaaaagtgcaacatgtcccgtgcctgtggtttagaatttagattgttcatct |
111 |
Q |
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| T |
43076212 |
agtgacatgaaccaaaacaaaaaatattaaaagaacaattttatgaacaaaaagtgcaacatgtcctgtgcctgtggtttagaatttagattgttcatct |
43076311 |
T |
|
| Q |
112 |
ctcttaatttctttgaacatatatcaatagatgcaatgcacccgtgacctatctatctatctctctgtaaatgattctctgattcagcttcagttaatat |
211 |
Q |
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| T |
43076312 |
ctcttaatttctttgaacatatatcaatagatgcaatgcacccgtgacctatctatctatctctctgtaaatgattctctgattcagcttcacttaatat |
43076411 |
T |
|
| Q |
212 |
atggtcccacctgaataacataacttgtatataaaaccatgacacaagccaatttttgtatagttccaaatcacattctccacctacatttttcttttgt |
311 |
Q |
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| T |
43076412 |
atggtcccacctgaataacataacttgtatataaaaccatgacacaagccaatttttgtatagttccaaatcacattctccacctacatttttcttttgt |
43076511 |
T |
|
| Q |
312 |
ttgtaacattctttctttctaagaataatacttcaaacatgaatttcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076512 |
ttgtaacattctttctttctaagaataatacttcaaacatgaatttcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacaca |
43076611 |
T |
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| Q |
412 |
atgtcatacaaagggacttcgaccaaaaccttctactggatttggaatgtctgccaat |
469 |
Q |
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| T |
43076612 |
atgtcatacaaagggacttcgaccaaaaccttctactggatttggaatgtctgccaat |
43076669 |
T |
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