View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_high_28 (Length: 478)
Name: NF16533_high_28
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_28 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Original strand, 39509738 - 39510189
Alignment:
| Q |
10 |
ataatacttcaagtagaaccaccccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcc |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39509738 |
ataatacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcc |
39509837 |
T |
|
| Q |
110 |
cttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39509838 |
cttaacacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatg |
39509937 |
T |
|
| Q |
210 |
ttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39509938 |
ttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgct |
39510037 |
T |
|
| Q |
310 |
tccaagtcaagaaactaggcaaatttgcaccgtacaaactttctctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39510038 |
tccaagtcaagaaactaggcaaatttgcaccttacaaactttctttaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatc |
39510137 |
T |
|
| Q |
410 |
acaatacccaattaaggaaacaagatgccgatgacgaatctttgacaaaacc |
461 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
39510138 |
acaatacccaattaaggaaacaaggtgtcgatgacgaatctttgacaaaacc |
39510189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 39574643 - 39575086
Alignment:
| Q |
15 |
acttcaagtagaaccaccccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaa |
114 |
Q |
| |
|
|||||||||||||||||||| || || || ||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||||| || |||| |
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|
| T |
39574643 |
acttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaaagtccctttaa |
39574742 |
T |
|
| Q |
115 |
cacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagt |
214 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
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|
| T |
39574743 |
cacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcgtcaagcaatatattagt |
39574842 |
T |
|
| Q |
215 |
ggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaa |
314 |
Q |
| |
|
||| |||||||| ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39574843 |
ggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttccaa |
39574942 |
T |
|
| Q |
315 |
gtcaagaaactaggcaaatttgcaccgtacaaactttctctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaat |
414 |
Q |
| |
|
||| |||| ||||||||||| | |||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
39574943 |
gtc---aaacaaggcaaatttgtatcgtacaaattatctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttcatcacaat |
39575039 |
T |
|
| Q |
415 |
acccaattaaggaaacaagatgccgatgacgaatctttgacaaaacc |
461 |
Q |
| |
|
| |||||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
39575040 |
atgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaacc |
39575086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 39542811 - 39543223
Alignment:
| Q |
18 |
tcaagtagaaccaccccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacac |
117 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||| || ||||||| |
|
|
| T |
39542811 |
tcaagtagaaccaccccaaaagaataaacatcagatttttctgtaagctgttgtgctctaaagtaatcaggatcaagatacccaaaagtccctttaacac |
39542910 |
T |
|
| Q |
118 |
ctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagtgga |
217 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
39542911 |
gtgtgctgacataagaatgttcatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcatcaagcaatatattagtgga |
39543010 |
T |
|
| Q |
218 |
cttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaagtc |
317 |
Q |
| |
|
||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39543011 |
tttcacgtcacggtgaattattccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttccaagtc |
39543110 |
T |
|
| Q |
318 |
aagaaactaggcaaatttgcaccgtacaaactttctctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacc |
417 |
Q |
| |
|
|||| ||||||||||| | ||| ||| | || |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
39543111 |
---aaacaaggcaaatttgtattgtataaattctccctaagtgtaccattttccatgtactcataaacaagtatcatctcacacctttcatcacaatacc |
39543207 |
T |
|
| Q |
418 |
caattaaggaaacaag |
433 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
39543208 |
ctattaaggaaacaag |
39543223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 39579176 - 39579622
Alignment:
| Q |
15 |
acttcaagtagaaccaccccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaa |
114 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||| |||||||||||||| ||| ||||||||||||| |||||||| ||||| || ||||| || |||| |
|
|
| T |
39579176 |
acttcaagtagaaccaccccaaaagaataaacatcggatttttctgtaaggtgtagtgatctaaagtaatcaggatcaagatacccaaaagtccctttaa |
39579275 |
T |
|
| Q |
115 |
cacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagt |
214 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
39579276 |
cacctgtgctcacataagaatgttgatcaagaggacctgcctttgaaaggccaaaatcagcaactttagcaacaagattctcatcaagcaatatattagt |
39579375 |
T |
|
| Q |
215 |
ggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaa |
314 |
Q |
| |
|
||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39579376 |
ggatttcacatcacggtggattattccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaa |
39579475 |
T |
|
| Q |
315 |
gtcaagaaactaggcaaatttgcaccgtacaaactttctctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaat |
414 |
Q |
| |
|
||||| |||||||||||| || | ||||||| | ||| |||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39579476 |
gtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtccctttttccatatattcataaacaagtatcatctcatacccttcatcacaat |
39579575 |
T |
|
| Q |
415 |
acccaattaaggaaacaagatgccgatgacgaatctttgacaaaacc |
461 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
39579576 |
acccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaacc |
39579622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 354 - 461
Target Start/End: Original strand, 39520340 - 39520447
Alignment:
| Q |
354 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatctttg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
|
| Q |
454 |
acaaaacc |
461 |
Q |
| |
|
|||||||| |
|
|
| T |
39520440 |
acaaaacc |
39520447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 46271722 - 46271665
Alignment:
| Q |
256 |
tgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttcca |
313 |
Q |
| |
|
||||||| || || ||||||| |||||| ||||| || |||||||||||||||||||| |
|
|
| T |
46271722 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttcca |
46271665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 35904669 - 35904726
Alignment:
| Q |
256 |
tgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttcca |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||| |
|
|
| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttcca |
35904726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 27539484 - 27539427
Alignment:
| Q |
256 |
tgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttcca |
313 |
Q |
| |
|
||||||| || || ||||||| |||||| ||||| || |||||||||||||||||||| |
|
|
| T |
27539484 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttcca |
27539427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 33872944 - 33872848
Alignment:
| Q |
33 |
ccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgctgacat |
129 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || ||||| ||||||||| || ||||| |||||||||||| | || ||||| ||||||| |||| |
|
|
| T |
33872944 |
ccgaatgaataaacatctgatttctctgtgagttgttgccttctaaagtattctggatcaagataaccgaaactacctttaaccgctgtgctaacat |
33872848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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