View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_high_49 (Length: 391)

Name: NF16533_high_49
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_high_49
NF16533_high_49
[»] chr7 (2 HSPs)
chr7 (23-231)||(8694515-8694719)
chr7 (230-378)||(8694745-8694893)
[»] chr3 (47 HSPs)
chr3 (19-228)||(11408875-11409084)
chr3 (19-231)||(28079482-28079694)
chr3 (19-217)||(28047509-28047707)
chr3 (19-228)||(27909879-27910088)
chr3 (19-220)||(27998667-27998868)
chr3 (19-220)||(28130039-28130240)
chr3 (34-219)||(28143968-28144153)
chr3 (19-217)||(17749150-17749348)
chr3 (19-217)||(19050470-19050668)
chr3 (34-231)||(28178105-28178302)
chr3 (32-228)||(28492190-28492386)
chr3 (44-217)||(27962960-27963133)
chr3 (32-228)||(28472149-28472345)
chr3 (32-228)||(28513171-28513367)
chr3 (30-217)||(27464195-27464382)
chr3 (253-378)||(11408698-11408823)
chr3 (253-378)||(27998494-27998619)
chr3 (235-378)||(28513401-28513544)
chr3 (235-373)||(28472379-28472517)
chr3 (235-373)||(28492420-28492558)
chr3 (243-378)||(27464435-27464570)
chr3 (255-378)||(28079308-28079431)
chr3 (255-378)||(28129854-28129977)
chr3 (258-378)||(28177940-28178060)
chr3 (255-378)||(28143782-28143905)
chr3 (230-378)||(17749388-17749536)
chr3 (230-378)||(19050708-19050856)
chr3 (254-378)||(27909702-27909826)
chr3 (302-378)||(27962772-27962848)
chr3 (231-368)||(26117292-26117429)
chr3 (231-368)||(26145296-26145433)
chr3 (231-368)||(26239556-26239693)
chr3 (230-368)||(18081280-18081418)
chr3 (309-364)||(28047349-28047404)
chr3 (301-371)||(26624394-26624464)
chr3 (88-215)||(26145126-26145253)
chr3 (258-361)||(26183763-26183866)
chr3 (88-167)||(26625563-26625642)
chr3 (306-368)||(27343891-27343953)
chr3 (302-368)||(27370189-27370255)
chr3 (311-368)||(18723481-18723538)
chr3 (117-226)||(27434675-27434784)
chr3 (243-367)||(27401421-27401545)
chr3 (258-361)||(26212370-26212473)
chr3 (301-367)||(18031534-18031600)
chr3 (105-215)||(26239403-26239513)
chr3 (83-215)||(26117117-26117249)
[»] chr4 (6 HSPs)
chr4 (36-217)||(9330099-9330280)
chr4 (36-217)||(9383882-9384063)
chr4 (32-145)||(9329801-9329914)
chr4 (32-145)||(9383584-9383697)
chr4 (235-378)||(9330325-9330468)
chr4 (235-378)||(9384108-9384251)
[»] chr5 (2 HSPs)
chr5 (235-373)||(26027270-26027408)
chr5 (158-217)||(26027166-26027225)
[»] scaffold0067 (2 HSPs)
scaffold0067 (88-225)||(24040-24177)
scaffold0067 (250-378)||(23860-23988)
[»] scaffold1344 (1 HSPs)
scaffold1344 (306-368)||(578-640)
[»] scaffold0854 (1 HSPs)
scaffold0854 (311-368)||(4533-4590)
[»] scaffold0043 (1 HSPs)
scaffold0043 (311-368)||(73305-73362)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 8694515 - 8694719
Alignment:
Q  23 taggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaat 122  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694515 taggcttcgagcagttgac----gaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaat 8694610  T
Q  123 aagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaattatcca 222  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8694611 aagctttgcaaatgtttacaatccttgatgtacagcttctctaaacttttcagagagtcaaaggaaagaggaccattgcacaattcttccaaattatcca 8694710  T
Q  223 ttcctttga 231  Q
    |||||||||    
T  8694711 ttcctttga 8694719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 230 - 378
Target Start/End: Original strand, 8694745 - 8694893
Alignment:
Q  230 gacaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatga 329  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8694745 gacaattgatacatgagaatcaatatgcttagtgtctaagaggcattgtagttgtgaaatgcatcttaaatgaagctcaactagatcattcataccatga 8694844  T
Q  330 tcgataggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694845 tcgataggaacaatctcaggtatgatatttctccatcccccctcgattc 8694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 11409084 - 11408875
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11409084 acactaggctaacagcagttgacagttgaaacagggagatcaacatcgggcatcttttcaacaacacgctctttagattgaataggtttaggttgcactt 11408985  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatta 218  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||||| |||||||||||||||||    
T  11408984 aaataagcttttcaaatttgtacaatccttgatggacagcttctctaaactgttcagagagtcaaaggaaagagagccattgaacaattcttccaaatta 11408885  T
Q  219 tccattcctt 228  Q
    ||||||||||    
T  11408884 tccattcctt 11408875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 28079694 - 28079482
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| ||||||||    
T  28079694 acactaggctaacagcagttgacagttgaaatagggagatcaacatcgggcatcctttcaatgacacactctttagattgaataggtttagtttgcactt 28079595  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatta 218  Q
    ||||||||||| |||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28079594 aaataagcttttcaaatgtttacaatcactgatggacaacttctctaaactgttcagagagtcaaaggaaagaggaccattgaacaattcttccaaatta 28079495  T
Q  219 tccattcctttga 231  Q
    |||||||||||||    
T  28079494 tccattcctttga 28079482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 28047707 - 28047509
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||| |||| || |||||| || ||||||||||||||||||||||||||||||||    
T  28047707 acactaggctaacagcagttgacagttgaaatagggagatcaacatcgggcatccttccaacgatacactctttagattgaataggtttaggttgcactt 28047608  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28047607 aaataagcttttcaaatgtttacaatccttgatggacagctcctctaaactgttcagagagtcaaaggaaagaggaccattgcacaattcttccaaatt 28047509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 27910088 - 27909879
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  27910088 acactaggctaacagcagttgacagttgaaatagggcgatcaacatcgggcatctttccaacgacacactctttagattgaataggtttagtttgcactt 27909989  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatta 218  Q
    ||||||||||| ||||||||| ||||   |||||||||| | ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  27909988 aaataagcttttcaaatgtttgcaattactgatggacagatcctctaaactgttcagagagtcaaaggaaagaggaccattgaacaattcttccaaatta 27909889  T
Q  219 tccattcctt 228  Q
    ||||||||||    
T  27909888 tccattcctt 27909879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 27998868 - 27998667
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||| |||| || || | |||||||||||||||||||||||||||| ||||||||    
T  27998868 acactaggctaacagcagttgacagttgaaatagggagatcaacatcgggcatccttccagcaacacgctctttagattgaataggtttagtttgcactt 27998769  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatta 218  Q
    ||||||||||| ||||||||||||||   ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  27998768 aaataagcttttcaaatgtttacaattgatgatgtacagcttctctaaactgttcagagagtcaaaggaaagaggaccattgcataattcttccaaatta 27998669  T
Q  219 tc 220  Q
    ||    
T  27998668 tc 27998667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 28130240 - 28130039
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   ||||||||||||||| |||||||||||||||||||| |||| ||||||  |||| ||||||||||||||||||||||||||||||||    
T  28130240 acactaggctaacagcagttgacagttgtaatagggagatcaacatcgggcatcctttcaataacacactctttagattgaataggtttaggttgcactt 28130141  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatta 218  Q
    ||||||||||| |||||||||||||||  ||||||||| || || ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28130140 aaataagcttttcaaatgtttacaatcactgatggacaactcctttaaacttttcagagagtcaaaggaaagaggaccattgaacaattcttccaaatta 28130041  T
Q  219 tc 220  Q
    ||    
T  28130040 tc 28130039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 28144153 - 28143968
Alignment:
Q  34 cagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaa 133  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| ||||  ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  28144153 cagttgacagttgaaatagggagatcaacatcgggcatcctttcaatgacaatctctttagattgaataggtttagtttgcacttaaataagcttttcaa 28144054  T
Q  134 atgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaattat 219  Q
    |||||||||||| | |||||||| ||||||||||   |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  28144053 atgtttacaatcttggatggacaacttctctaaaaagttcagagagtcaaaggaaagaggaccattgaacaattcttccaaattat 28143968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 17749150 - 17749348
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   |||||||||||| ||||||| ||| ||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||||||||||    
T  17749150 acactaggctaacagcagttgacagatgaaataaggacatcaacatcgggcatttttccagcgacacactctttagattgaataggtttaggttgcactt 17749249  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||  ||||| ||||||||| ||||||    
T  17749250 aaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaatt 17749348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 19050470 - 19050668
Alignment:
Q  19 acactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcactt 118  Q
    ||||||||||   |||||||||||| ||||||| ||| ||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||||||||||    
T  19050470 acactaggctaacagcagttgacagatgaaataaggacatcaacatcgggcatttttccagcgacacactctttagattgaataggtttaggttgcactt 19050569  T
Q  119 aaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||  ||||| ||||||||| ||||||    
T  19050570 aaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaatt 19050668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 28178302 - 28178105
Alignment:
Q  34 cagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaa 133  Q
    |||||||||||||||||||||| ||||||||||| |||  || ||| || |  |||||||||||| | ||||||||||||||||||||||||||||  ||    
T  28178302 cagttgacagttgaaatagggatatcaacatcgggcattcttccaatgaaagactctttagattgcagaggtttaggttgcacttaaataagctttttaa 28178203  T
Q  134 atgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaattatccattcctttga 231  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  28178202 atgtttacattcattgatggacagcttctctaaactgttcagagagtcaaaggaaacaggaccattgaacaattcttctaaattatccattcctttga 28178105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 28492190 - 28492386
Alignment:
Q  32 agcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgc 131  Q
    ||||||||||| |||||||| ||||||||||||||| |||| |  ||| || |  |||||||||||| | ||||||| |||||||| ||||||| ||| |    
T  28492190 agcagttgacaattgaaatatggagatcaacatcgggcatcgtaccaatgaaagactctttagattgcagaggtttatgttgcactcaaataagattttc 28492289  T
Q  132 aaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaattatccattcctt 228  Q
    ||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  28492290 aaatgtttacaatcctcaatggacagattctctaaactgttcagagagtcaaaggaaagaggacctttgaacaattcttccaaattatccattcctt 28492386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 27963133 - 27962960
Alignment:
Q  44 ttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttacaa 143  Q
    ||||||| |||||||||||||||| |||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27963133 ttgaaatggggagatcaacatcgggcatccttccaatgacacactctttagattgaataggtttaggttgcacttaaataagcttttcaaatgtttacaa 27963034  T
Q  144 tccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    || |  ||||| || ||||||||||| |||| |||||||||||| | |||| ||||| ||||||||||||||||    
T  27963033 tcttcaatggaaagattctctaaactgttcaaagagtcaaaggacaaaggaccattgaacaattcttccaaatt 27962960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 28472149 - 28472345
Alignment:
Q  32 agcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgc 131  Q
    ||||||||||| |||||||| ||||||||||||||| |||| |  ||| || |  |||||||||||| | ||||||| |||||||| ||||||| ||| |    
T  28472149 agcagttgacatttgaaatatggagatcaacatcgggcatcgtaccaatgaaagactctttagattgcagaggtttatgttgcactcaaataagattttc 28472248  T
Q  132 aaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaattatccattcctt 228  Q
    ||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||| |  || |||||||||||||||||||||||||||    
T  28472249 aaatgtttacaatcctcaatggacagattctctaaactgttcagagagtcaaaggaaagaggaccgctgaacaattcttccaaattatccattcctt 28472345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 28513171 - 28513367
Alignment:
Q  32 agcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgc 131  Q
    |||||||||||||||||||| ||||||||||||||| |||| || ||| || |  |||||||||||| | ||||||| ||||||||  |||||| ||| |    
T  28513171 agcagttgacagttgaaatatggagatcaacatcgggcatcgttccaatgaaagactctttagattgcagaggtttatgttgcactcgaataagattttc 28513270  T
Q  132 aaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaattatccattcctt 228  Q
    ||| ||||||||| ||  |||||||| ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  28513271 aaacgtttacaattctcaatggacagattctctaaactgttcagagagtcaaaggaaagaggacctttgaacaattcttccaaattatccattcctt 28513367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 27464195 - 27464382
Alignment:
Q  30 cgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagcttt 129  Q
    |||||||||||| |||||||||||||| ||||||  || ||||  | ||| | ||| ||||| | |||| | |||||||| ||||||||||||||||| |    
T  27464195 cgagcagttgacggttgaaatagggaggtcaacaatgggcatccctccaatgtcacactcttcaaattgcagaggtttagcttgcacttaaataagctct 27464294  T
Q  130 gcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    ||||||||| ||| | ||||||||||| |||||||||| | || |||||||||||||||| |||| ||||| ||||||||||||||||    
T  27464295 gcaaatgttcacagttcttgatggacaacttctctaaattgtttagagagtcaaaggaaacaggaccattgaacaattcttccaaatt 27464382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 378
Target Start/End: Complemental strand, 11408823 - 11408698
Alignment:
Q  253 tatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtat 352  Q
    ||||| ||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||| || ||||||||    
T  11408823 tatgcatagtgtcaatgaggcattttagttgtgaaatgcatcttaaatgaagctcaactagatcattcataccttgatctaaaggaaccatttcaggtat 11408724  T
Q  353 gatatttctccatcccccctcgattc 378  Q
    ||||||||||||| ||||| ||||||    
T  11408723 gatatttctccattcccccacgattc 11408698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 253 - 378
Target Start/End: Complemental strand, 27998619 - 27998494
Alignment:
Q  253 tatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtat 352  Q
    ||||||||||||| | ||||||||||| |||||||||| |||| |||  |||||||||||||||||||||||||||| | |||||||  |||||||||||    
T  27998619 tatgcttagtgtcaatgaggcattgtaattgtgaaatggatctcaaatcaagctcaactagatcattcataccatgacccataggaatcatctcaggtat 27998520  T
Q  353 gatatttctccatcccccctcgattc 378  Q
    ||||||||||| ||||||||| ||||    
T  27998519 gatatttctccctcccccctccattc 27998494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 235 - 378
Target Start/End: Original strand, 28513401 - 28513544
Alignment:
Q  235 ttgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgat 334  Q
    ||||||| ||||| || ||||| || ||||| | ||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||  ||| ||    
T  28513401 ttgatacttgagattcgatatgtttggtgtcaatgaggcattgtagttgtgaaatgcatctcaaagtaagctcgactagatcattcataccacaatccat 28513500  T
Q  335 aggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    ||||||||| ||||| || |||||||||||||||||||| ||||    
T  28513501 aggaacaatttcaggaatcatatttctccatcccccctccattc 28513544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 28472379 - 28472517
Alignment:
Q  235 ttgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgat 334  Q
    |||||||  |||| ||| |||| |||||||| | ||||||||||||||||||||| |  || |||| |||||| |||||||||||||||||||| || ||    
T  28472379 ttgatactagagattcagtatgtttagtgtcaatgaggcattgtagttgtgaaatactactcaaactaagctcgactagatcattcataccatggtccat 28472478  T
Q  335 aggaacaatctcaggtatgatatttctccatcccccctc 373  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  28472479 aggaacaatctcaggcatcatatttctccatcccccctc 28472517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 28492420 - 28492558
Alignment:
Q  235 ttgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgat 334  Q
    |||||||  |||| ||| |||| |||||||| | ||||||||||||||||||||| |  || |||| |||||  ||||||||||||||||||||||| ||    
T  28492420 ttgatactagagattcagtatgtttagtgtcaatgaggcattgtagttgtgaaatactactcaaactaagcttgactagatcattcataccatgatccat 28492519  T
Q  335 aggaacaatctcaggtatgatatttctccatcccccctc 373  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  28492520 aggaacaatctcaggcatcatatttctccatcccccctc 28492558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 27464435 - 27464570
Alignment:
Q  243 tgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaa 342  Q
    ||||||||| |||||| |||||| | |||||| || |  ||||||||| || | |||  |||||| ||||||||||||||||||||||| ||||||||||    
T  27464435 tgagaatcagtatgctgagtgtcaatgaggcagtgcaactgtgaaatggatatcaaattaagctcgactagatcattcataccatgatccataggaacaa 27464534  T
Q  343 tctcaggtatgatatttctccatcccccctcgattc 378  Q
    ||||||||||||| ||||||||||||||||| ||||    
T  27464535 tctcaggtatgatgtttctccatcccccctccattc 27464570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 28079431 - 28079308
Alignment:
Q  255 tgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatga 354  Q
    ||||||||||| | |||||| |||| |||||||||| |||| ||   |||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  28079431 tgcttagtgtcaatgaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccattggaacaatatcaggtatga 28079332  T
Q  355 tatttctccatcccccctcgattc 378  Q
    |||||||||| ||||| |||||||    
T  28079331 tatttctccaccccccttcgattc 28079308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 28129977 - 28129854
Alignment:
Q  255 tgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatga 354  Q
    ||||||||||| | |||||| |||| |||||||||| |||  |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||    
T  28129977 tgcttagtgtcaatgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatga 28129878  T
Q  355 tatttctccatcccccctcgattc 378  Q
    | ||| ||||| ||||||||||||    
T  28129877 tgtttttccattccccctcgattc 28129854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 378
Target Start/End: Complemental strand, 28178060 - 28177940
Alignment:
Q  258 ttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatat 357  Q
    |||||||| | |||||| |||| |||||||||| |||| |||| |||||| | ||||||||||||||||||||| | ||||||||||||||||| ||| |    
T  28178060 ttagtgtcaatgaggcactgtaattgtgaaatggatctcaaaccaagctcgattagatcattcataccatgatccagaggaacaatctcaggtacgatgt 28177961  T
Q  358 ttctccatcccccctcgattc 378  Q
    ||||||| |||||||||||||    
T  28177960 ttctccaccccccctcgattc 28177940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 28143905 - 28143782
Alignment:
Q  255 tgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatga 354  Q
    |||||||| || | |||||| |||| |||||||||| |||  |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||    
T  28143905 tgcttagtatcaatgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatga 28143806  T
Q  355 tatttctccatcccccctcgattc 378  Q
    | ||| ||||| ||||||||||||    
T  28143805 tgtttttccattccccctcgattc 28143782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 378
Target Start/End: Original strand, 17749388 - 17749536
Alignment:
Q  230 gacaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatga 329  Q
    |||| ||| ||| |||||| |||||||||||||||| | ||||||  | |||||||||||  ||  |||  |||||||||||| |||||||||||| |||    
T  17749388 gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattgaagctcaactaaatcattcataccttga 17749487  T
Q  330 tcgataggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    |  |  |||||||| ||||||||||||||||||||||||||||||||||    
T  17749488 ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattc 17749536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 378
Target Start/End: Original strand, 19050708 - 19050856
Alignment:
Q  230 gacaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatga 329  Q
    |||| ||| ||| |||||| |||||||||||||||| | ||||||  | |||||||||||  ||  |||  |||||||||||| |||||||||||| |||    
T  19050708 gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattgaagctcaactaaatcattcataccttga 19050807  T
Q  330 tcgataggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    |  |  |||||||| ||||||||||||||||||||||||||||||||||    
T  19050808 ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattc 19050856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 378
Target Start/End: Complemental strand, 27909826 - 27909702
Alignment:
Q  254 atgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatg 353  Q
    |||||||||||| |  ||||| |||| |||||||||| |||| ||   ||||||||||||||||||||||||||| |  | |||||  ||||||||||||    
T  27909826 atgcttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgtttcaaaggaatcatctcaggtatg 27909727  T
Q  354 atatttctccatcccccctcgattc 378  Q
    |||||||||||||||||||||||||    
T  27909726 atatttctccatcccccctcgattc 27909702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 27962848 - 27962772
Alignment:
Q  302 aagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27962848 aagctcgactagatcattcataccatgctccataggaacaatctcaggtatgatatttctccatcccccctccattc 27962772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 26117292 - 26117429
Alignment:
Q  231 acaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgat 330  Q
    ||||||| ||| ||||||| |||||| ||||||||||| ||||| ||||||||||||||   ||  |||| |||||||| ||||||||||||||| | ||    
T  26117292 acaattggtacttgagaattaatatgtttagtgtctacaaggcactgtagttgtgaaatttctcccaaacaaagctcaattagatcattcataccttcat 26117391  T
Q  331 cgataggaacaatctcaggtatgatatttctccatccc 368  Q
    | |||||||||||||| || |||| |||| ||||||||    
T  26117392 ctataggaacaatctctggcatgagatttatccatccc 26117429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 26145296 - 26145433
Alignment:
Q  231 acaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgat 330  Q
    ||||||| ||| ||||||| |||||| ||||||||||| ||||| ||||||||||||||   ||| | | ||||||||| ||||||||||||||| ||||    
T  26145296 acaattggtacttgagaattaatatgtttagtgtctactaggcactgtagttgtgaaatttctctcagatgaagctcaattagatcattcataccttgat 26145395  T
Q  331 cgataggaacaatctcaggtatgatatttctccatccc 368  Q
    | |||||||| ||||| || |||| |||||| ||||||    
T  26145396 ctataggaaccatctcgggcatgagatttctacatccc 26145433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 26239556 - 26239693
Alignment:
Q  231 acaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgat 330  Q
    ||||||| ||| ||||||| |||||| ||||||||||| ||| | ||||||||||||||   | | | | |||||| || ||||||||||||||| | ||    
T  26239556 acaattggtacttgagaattaatatgtttagtgtctacaaggtactgtagttgtgaaatttctttcagatgaagcttaattagatcattcataccttcat 26239655  T
Q  331 cgataggaacaatctcaggtatgatatttctccatccc 368  Q
    | |||||||||||||| || |||| |||| ||||||||    
T  26239656 ctataggaacaatctctggcatgagatttatccatccc 26239693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 18081280 - 18081418
Alignment:
Q  230 gacaattgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatga 329  Q
    |||| ||| ||| |||||||||||||| | | ||| || |||| | ||||||||||||    || | ||| ||||||||| ||||||||||||||| |||    
T  18081280 gacagttggtacttgagaatcaatatgttcaatgtatatgaggtactgtagttgtgaatcatatttcaaatgaagctcaattagatcattcataccttga 18081379  T
Q  330 tcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    || ||||||||||| || || |||| |||||||||||||    
T  18081380 tctataggaacaatttctggcatgagatttctccatccc 18081418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 28047404 - 28047349
Alignment:
Q  309 actagatcattcataccatgatcgataggaacaatctcaggtatgatatttctcca 364  Q
    ||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  28047404 actagattattcataccatgatccaaaggaacaatatcaggtatgatatttctcca 28047349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 26624464 - 26624394
Alignment:
Q  301 gaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatcccccc 371  Q
    |||||||||| | ||||||||||||  | || ||||||||||||||||| |||| ||||||||||||||||    
T  26624464 gaagctcaacaatatcattcatacctagttctataggaacaatctcaggcatgagatttctccatcccccc 26624394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 215
Target Start/End: Original strand, 26145126 - 26145253
Alignment:
Q  88 tctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaagga 187  Q
    |||||||||||   || |||||| |||| ||||| ||||||||||||| || ||| ||||| ||  |||||| ||||||| | ||||  |||||||||||    
T  26145126 tctttagattgctgagatttaggctgcatttaaacaagctttgcaaattttcacactccttaatatacagctcctctaaagtgttcattgagtcaaagga 26145225  T
Q  188 aagaggatcattgcacaattcttccaaa 215  Q
     |  ||| ||||||| ||||||||||||    
T  26145226 gatgggaccattgcataattcttccaaa 26145253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 361
Target Start/End: Original strand, 26183763 - 26183866
Alignment:
Q  258 ttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatat 357  Q
    ||||||||||| ||||| |||||||||||| | | |   ||| ||||||||| ||||||||||||||| || || |||||||| ||||| || |||| ||    
T  26183763 ttagtgtctacaaggcactgtagttgtgaactaccttccaaatgaagctcaattagatcattcataccttgttctataggaaccatctctggcatgagat 26183862  T
Q  358 ttct 361  Q
    ||||    
T  26183863 ttct 26183866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 26625642 - 26625563
Alignment:
Q  88 tctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttacaatccttgatggacagcttctctaaa 167  Q
    ||||||||||| | |||||||| ||||| ||||| || ||||||||||||| ||||| |||||| || |||| |||||||    
T  26625642 tctttagattgcagaggtttagcttgcatttaaacaaactttgcaaatgttcacaatgcttgattgatagctcctctaaa 26625563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 27343953 - 27343891
Alignment:
Q  306 tcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    |||| ||||||||||||||||| ||| ||||||| |||| |||| |||| |||||||||||||    
T  27343953 tcaattagatcattcataccattatccataggaagaatcccaggcatgagatttctccatccc 27343891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 27370255 - 27370189
Alignment:
Q  302 aagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    |||||||| ||||| ||||||||||| ||| ||||||| |||| |||| |||| |||||||||||||    
T  27370255 aagctcaattagattattcataccattatctataggaagaatcccaggcatgagatttctccatccc 27370189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 18723481 - 18723538
Alignment:
Q  311 tagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    ||||||||||||||||| ||| |||| ||||||| |||| |||| |||||||||||||    
T  18723481 tagatcattcataccattatctatagaaacaatcccaggcatgagatttctccatccc 18723538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 27434675 - 27434784
Alignment:
Q  117 ttaaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaat 216  Q
    ||||| ||||||| ||||||||||||||||||||| || | ||||||||||    ||| ||| ||| ||||||  ||| ||||  ||| |||||||||||    
T  27434675 ttaaacaagcttttcaaatgtttacaatccttgattgataccttctctaaatacatcaaagattcagaggaaacgggaccattaaacagttcttccaaat 27434774  T
Q  217 tatccattcc 226  Q
    | ||||||||    
T  27434775 tttccattcc 27434784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 27401421 - 27401545
Alignment:
Q  243 tgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaa 342  Q
    |||||||||||||| |||||||||| |||||| ||||||| ||||   |||   |   |||||| ||| ||||||||||| ||||  || |||||||| |    
T  27401421 tgagaatcaatatgtttagtgtctatgaggcactgtagttctgaaccccatgacaggtgaagcttaacaagatcattcatgccattttctataggaacca 27401520  T
Q  343 tctcaggtatgatatttctccatcc 367  Q
     |||||| |||| ||||||||||||    
T  27401521 cctcaggcatgagatttctccatcc 27401545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 361
Target Start/End: Original strand, 26212370 - 26212473
Alignment:
Q  258 ttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatat 357  Q
    ||||||||||| ||||| |||||||||||| | | |   ||| ||||||||| ||||||||||||||| || |  |||||||| ||||| || |||| ||    
T  26212370 ttagtgtctacaaggcactgtagttgtgaactaccttccaaatgaagctcaattagatcattcataccttgttttataggaaccatctctggcatgagat 26212469  T
Q  358 ttct 361  Q
    ||||    
T  26212470 ttct 26212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 18031534 - 18031600
Alignment:
Q  301 gaagctcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatcc 367  Q
    |||||||||  ||||||||||||||||  || |||||||| ||||| || |||| ||||||||||||    
T  18031534 gaagctcaagaagatcattcataccattttctataggaaccatctctggcatgagatttctccatcc 18031600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 26239403 - 26239513
Alignment:
Q  105 tttaggttgcacttaaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcaca 204  Q
    |||||| |||| ||||| |||||| |||||| || ||| |||||||| || |||||||||||| | |||   ||||||||||  |  ||| ||||||| |    
T  26239403 tttaggctgcatttaaacaagcttcgcaaattttcacactccttgatagatagcttctctaaattgttcgttgagtcaaaggcgatgggaccattgcata 26239502  T
Q  205 attcttccaaa 215  Q
    |||||||||||    
T  26239503 attcttccaaa 26239513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 26117117 - 26117249
Alignment:
Q  83 cacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtca 182  Q
    |||| |||||||||||   || |||||| |||| ||||| ||||||||||||| |||||| || || |   | |||| ||||||| | ||||  ||||||    
T  26117117 cacggtctttagattgctgagatttaggctgcatttaaacaagctttgcaaatttttacactcgttcacatatagctcctctaaattgttcattgagtca 26117216  T
Q  183 aaggaaagaggatcattgcacaattcttccaaa 215  Q
    ||||| |  ||| ||||||| ||||||||||||    
T  26117217 aaggagatgggaccattgcataattcttccaaa 26117249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 9330099 - 9330280
Alignment:
Q  36 gttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaat 135  Q
    |||||||||||||||| ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9330099 gttgacagttgaaataaggagatcaacatcgggcatccttctaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaat 9330198  T
Q  136 gtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  9330199 gtttgcaatccttgatggacagcttctctaaactgttcaaagagtcaaaggaaagaggaccattgaacaattcttccaaatt 9330280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 9383882 - 9384063
Alignment:
Q  36 gttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaat 135  Q
    |||||||||||||||| ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9383882 gttgacagttgaaataaggagatcaacatcgggcatccttctaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaat 9383981  T
Q  136 gtttacaatccttgatggacagcttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  9383982 gtttgcaatccttgatggacagcttctctaaactgttcaaagagtcaaaggaaagaggaccattgaacaattcttccaaatt 9384063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 9329801 - 9329914
Alignment:
Q  32 agcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgc 131  Q
    |||||||||||||||||||| || |||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |    
T  9329801 agcagttgacagttgaaataaggcgatcaacatcgggcatctttccaacgacacactctttagattgaataggtttatgttgcacttgaataaacttttc 9329900  T
Q  132 aaatgtttacaatc 145  Q
    ||||||||||||||    
T  9329901 aaatgtttacaatc 9329914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 9383584 - 9383697
Alignment:
Q  32 agcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgc 131  Q
    |||||||||||||||||||| || |||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |    
T  9383584 agcagttgacagttgaaataaggcgatcaacatcgggcatctttccaacgacacactctttagattgaataggtttatgttgcacttgaataaacttttc 9383683  T
Q  132 aaatgtttacaatc 145  Q
    ||||||||||||||    
T  9383684 aaatgtttacaatc 9383697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 378
Target Start/End: Original strand, 9330325 - 9330468
Alignment:
Q  235 ttgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgat 334  Q
    ||||||| ||||| ||| ||||| ||||||| | |||||||| ||||||| |||||||||| ||| |||||||| | |||||||||||||| ||||| |     
T  9330325 ttgatacttgagattcagtatgcgtagtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagctcagccagatcattcataccttgatccaa 9330424  T
Q  335 aggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||||    
T  9330425 aggaacaatctcaggtatgatgtttctccacaccctctcgattc 9330468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 378
Target Start/End: Original strand, 9384108 - 9384251
Alignment:
Q  235 ttgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgat 334  Q
    ||||||| ||||| ||| ||||| ||||||| | |||||||| ||||||| |||||||||| ||| |||||||| | |||||||||||||| ||||| |     
T  9384108 ttgatacttgagattcagtatgcgtagtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagctcagccagatcattcataccttgatccaa 9384207  T
Q  335 aggaacaatctcaggtatgatatttctccatcccccctcgattc 378  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||||    
T  9384208 aggaacaatctcaggtatgatgtttctccacaccctctcgattc 9384251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 26027270 - 26027408
Alignment:
Q  235 ttgatacatgagaatcaatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgat 334  Q
    ||||||| ||||| ||| || |||||||||  | |||| | |||| |||||||||| |||| |||  |||||| ||||||||||||||||||||||| ||    
T  26027270 ttgatacttgagattcagtaggcttagtgttaatgaggtactgtaattgtgaaatggatctcaaagaaagctcgactagatcattcataccatgatccat 26027369  T
Q  335 aggaacaatctcaggtatgatatttctccatcccccctc 373  Q
    | ||||||||||||| |||||||||||||| || |||||    
T  26027370 atgaacaatctcaggcatgatatttctccaccctccctc 26027408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 26027166 - 26027225
Alignment:
Q  158 cttctctaaacttttcagagagtcaaaggaaagaggatcattgcacaattcttccaaatt 217  Q
    |||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||    
T  26027166 cttctctaaactgttgagagagtcaaaggaaagaggaccattgaacaattcttccaaatt 26027225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 24177 - 24040
Alignment:
Q  88 tctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttacaatccttgatggacagcttctctaaacttttcagagagtcaaagga 187  Q
    ||||||||||| | |||||| | | | | ||||| ||||||||||||||||||||||||||||| || | ||||| |||| | |||||| ||||||||||    
T  24177 tctttagattgcagaggttttgctcgaatttaaacaagctttgcaaatgtttacaatccttgattgatatcttctgtaaattcttcagaaagtcaaagga 24078  T
Q  188 aagaggatcattgcacaattcttccaaattatccattc 225  Q
    ||  ||| ||||  ||| |||||||||||| |||||||    
T  24077 aacgggaccattaaacagttcttccaaattttccattc 24040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 23988 - 23860
Alignment:
Q  250 caatatgcttagtgtctacgaggcattgtagttgtgaaatgcatcttaaacgaagctcaactagatcattcataccatgatcgataggaacaatctcagg 349  Q
    |||||| ||| ||||| |||||| |  | |||||||||||||| || |||| ||| ||||||| ||| |||||||| ||||| |||| ||||||||  ||    
T  23988 caatatccttcgtgtcaacgaggtaccgaagttgtgaaatgcaactcaaactaagttcaactatatctttcataccttgatccatagaaacaatctgggg 23889  T
Q  350 tatgatatttctccatcccccctcgattc 378  Q
    ||||| |||||||||||||  ||||||||    
T  23888 tatgagatttctccatcccgtctcgattc 23860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 640 - 578
Alignment:
Q  306 tcaactagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    |||| ||||||||||||||||| ||| ||||||| |||| |||| |||| |||||||||||||    
T  640 tcaattagatcattcataccattatctataggaataatcccaggcatgagatttctccatccc 578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 4533 - 4590
Alignment:
Q  311 tagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    ||||| ||||||||||| ||| |||||||||||| |||| |||| |||||||||||||    
T  4533 tagataattcataccattatctataggaacaatcccaggcatgagatttctccatccc 4590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 73305 - 73362
Alignment:
Q  311 tagatcattcataccatgatcgataggaacaatctcaggtatgatatttctccatccc 368  Q
    ||||||||||||||||| ||| |||| ||||||| |||| |||| |||||||||||||    
T  73305 tagatcattcataccattatctatagaaacaatcccaggcatgagatttctccatccc 73362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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