View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_high_5 (Length: 655)

Name: NF16533_high_5
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_high_5
NF16533_high_5
[»] chr1 (3 HSPs)
chr1 (219-644)||(47052842-47053283)
chr1 (17-196)||(47053283-47053458)
chr1 (296-341)||(47061641-47061686)
[»] chr8 (4 HSPs)
chr8 (37-86)||(44141111-44141160)
chr8 (37-86)||(37684380-37684429)
chr8 (37-86)||(32927867-32927916)
chr8 (46-86)||(7720152-7720192)
[»] chr4 (5 HSPs)
chr4 (37-86)||(50061689-50061738)
chr4 (37-86)||(32818431-32818480)
chr4 (37-86)||(46344893-46344941)
chr4 (37-81)||(25927288-25927332)
chr4 (53-86)||(38498238-38498271)
[»] chr6 (1 HSPs)
chr6 (37-81)||(5724691-5724735)
[»] chr7 (3 HSPs)
chr7 (53-86)||(23441307-23441340)
chr7 (37-81)||(15903591-15903635)
chr7 (42-86)||(27571837-27571881)
[»] chr5 (1 HSPs)
chr5 (37-78)||(9818717-9818758)
[»] chr3 (2 HSPs)
chr3 (46-86)||(7717391-7717431)
chr3 (37-81)||(25359635-25359679)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 219 - 644
Target Start/End: Complemental strand, 47053283 - 47052842
Alignment:
Q  219 tgagagtaaccataatggtttagcataatcactgacgtagggttgatgaaaatgaaag------------------agagcgttatgttacgtacgaatc 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||    
T  47053283 tgagagtaaccataatggcttagcataatcactgacgtagggttgatgaaaatgaaagtgaagaataaaatgaaagagagcgttatgttacgtacgaatc 47053184  T
Q  301 aggggcgcagatttggagattgtatagatttgtgtcaaggagagctttaaccaaagctctgaggccaggtgcatcgattccatcatcgtttgtgatcatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053183 aggggcgcagatttggagattgtatagatttgtgtcaaggagagctttaaccaaagctctgaggccaggtgcatcgattccatcatcgtttgtgatcatg 47053084  T
Q  401 atcgttcctctgttattcttaccttcctccattttgcttgaatgcgaattaccctttcgatgaatgaatgaatgaatgactagactagatagagagacaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||| |||||||||||    
T  47053083 atcgttcctctgttattcttaccttcctccattttgcttgaatacgaattaccctttcgatgaatgaatga----atgactagactagctagagagacaa 47052988  T
Q  501 agattgggagttagttaggaattgaaaattgaaatatactactgtacgaatatggcgctatgtctttaagctaatattcccttccaccaattaattaatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47052987 agattgggagttagttaggaattgaaaattgaaatatactactgtacgaatatggcgttatgtctttaagctaatattcccttccaccaattaattaatt 47052888  T
Q  601 tcttt--cacttcactgcttcaataataatctacaaaattacctat 644  Q
    |||||  |||||||||||||||||||||||||||||||||||||||    
T  47052887 tctttcacacttcactgcttcaataataatctacaaaattacctat 47052842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 47053458 - 47053283
Alignment:
Q  17 aaaattcaattctagaataaaaatcctaacttcaaatagaatcaatta----tggaggcaaaatcaattatactnnnnnnnncaacagaataaattgtac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |    ||||||||||||||||| ||||         || | ||||| ||||||    
T  47053458 aaaattcaattctagaataaaaatcctaacttcaaatagaatcaatcaattctggaggcaaaatcaattctactaa-------aaaaaaataa-ttgtac 47053367  T
Q  113 atatccggaatcaattttggtctatttaaaagcggaaccaaacataaacatacacttaattaactgattctcgtaaaatagggt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053366 atatccggaatcaattttggtctatttaaaagcggaaccaaacataaacatacacttaattaactgattctcgtaaaatagggt 47053283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 47061686 - 47061641
Alignment:
Q  296 gaatcaggggcgcagatttggagattgtatagatttgtgtcaagga 341  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||    
T  47061686 gaatcaggggcgcagacttggagattgtatagattggtggcaagga 47061641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 44141111 - 44141160
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  44141111 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 44141160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 37684429 - 37684380
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  37684429 aaatcctaacttcaagtagaatcaattctggagacaaaatcaattctact 37684380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 32927916 - 32927867
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    |||||||| |||||| ||||||||| ||| ||||||||||||||| ||||    
T  32927916 aaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctact 32927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 7720192 - 7720152
Alignment:
Q  46 cttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    |||||||||||||||||| || || ||||||||||||||||    
T  7720192 cttcaaatagaatcaattttgtagacaaaatcaattatact 7720152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 50061689 - 50061738
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  50061689 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 50061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 32818431 - 32818480
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||| ||||    
T  32818431 aaattctagcttcaaatagaatcaattctggaggcaaaatcaattctact 32818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 46344893 - 46344941
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  46344893 aaattctaacttcaagtagaat-aattatggaggcaaaatcaattatact 46344941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 25927332 - 25927288
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 81  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||    
T  25927332 aaatcttaactccaaatagaatcaattatggaggcataatcaatt 25927288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 38498271 - 38498238
Alignment:
Q  53 tagaatcaattatggaggcaaaatcaattatact 86  Q
    |||||||||||||||||||||||| |||||||||    
T  38498271 tagaatcaattatggaggcaaaataaattatact 38498238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 5724691 - 5724735
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 81  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||    
T  5724691 aaatcctagcttcaagtagaatcaattttggaggcaaaatcaatt 5724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 23441307 - 23441340
Alignment:
Q  53 tagaatcaattatggaggcaaaatcaattatact 86  Q
    ||||||||||||||||||||||||||||| ||||    
T  23441307 tagaatcaattatggaggcaaaatcaattgtact 23441340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 15903591 - 15903635
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 81  Q
    |||||| |||||||| || |||||||| |||||||||||||||||    
T  15903591 aaatcccaacttcaagtataatcaattttggaggcaaaatcaatt 15903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 27571881 - 27571837
Alignment:
Q  42 ctaacttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    |||||||||| ||||||||||| | |||| |||||||||||||||    
T  27571881 ctaacttcaagtagaatcaattcttgaggtaaaatcaattatact 27571837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 9818758 - 9818717
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatca 78  Q
    ||||| || |||||| ||||||||||||||||||||||||||    
T  9818758 aaatcatagcttcaagtagaatcaattatggaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 7717391 - 7717431
Alignment:
Q  46 cttcaaatagaatcaattatggaggcaaaatcaattatact 86  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  7717391 cttcaagtagaatcaattctggaggcaaaatcaattctact 7717431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 25359635 - 25359679
Alignment:
Q  37 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 81  Q
    |||| |||||||||| ||||||||||| |||||||| ||||||||    
T  25359635 aaattctaacttcaagtagaatcaattctggaggcagaatcaatt 25359679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University