View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_51 (Length: 386)
Name: NF16533_high_51
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_51 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 21292 - 20933
Alignment:
| Q |
16 |
catcataaacgtcttggtctttgaaaagatcaagttcatttggttaaaaggaaaactctaatcgctatgggatttcttcaatacaagatcaactatcatt |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21292 |
catcataaacgtcttggtcttttaaaagatcaagttcatttggttaaaaggaaaactctaatcgctatgggatttcttcaatacaagatcaactatcatt |
21193 |
T |
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| Q |
116 |
cgagaaggggtttgtcattgtgattcgtgcatgccaattgttagcccaaaagaatgatggaataatattggttgggctggcgggtccttcgggagctgga |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21192 |
cgagaaggggtttttcattgtgattcgtgcatgccaattgttagcccaaaataatgatggaataatattggttggggtggcgggtccttcgggagctgga |
21093 |
T |
|
| Q |
216 |
aagactatatttaccgaaaagatactcaacttcatgcctagcattgttgtcatttcaatggatagttacaatgatgctagtcgaattgttgatggcaact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
21092 |
aagactatatttaccgaaaagatactcaacttcatgcctagcattgctgtcatttcaatggataattacaaggatgctagtcgaattgttgatggcaact |
20993 |
T |
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| Q |
316 |
ttgatggtaaatcatcatctggtcttaggtgtttcttttatcattctttatgtggttcat |
375 |
Q |
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| T |
20992 |
ttgatggtaaatcatcatctggtcttaggtgtttcttttatcattctttatgtggttcat |
20933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 28071759 - 28072119
Alignment:
| Q |
16 |
catcataaacgtcttggtctttgaaaagatcaagttcatttggttaaaaggaaa-actctaatcgctatgggatttcttcaatacaagatcaactatcat |
114 |
Q |
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| T |
28071759 |
catcataaacgtcttggtcttttaaaagatcaagttcatttggttaaaaggaaagactctaatcgctatgtgatttcttcaatacaagatcaactatcat |
28071858 |
T |
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| Q |
115 |
tcgagaaggggtttgtcattgtgattcgtgcatgccaattgttagcccaaaagaatgatggaataatattggttgggctggcgggtccttcgggagctgg |
214 |
Q |
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| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
28071859 |
ttgagaaggggtttttcattgtgattcgtgcgtgccaactgttagcccaaaagaatgatggaataatattggttggggtggcgggtccttcaggagctgg |
28071958 |
T |
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| Q |
215 |
aaagactatatttaccgaaaagatactcaacttcatgcctagcattgttgtcatttcaatggatagttacaatgatgctagtcgaattgttgatggcaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
28071959 |
gaagactatatttaccgaaaagatactcaacttcatgcccagcattgctgtcatttcaatggataattacaacgatgctagtcgaattgttgatggcaac |
28072058 |
T |
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| Q |
315 |
tttgatggtaaatcatcatctggtcttaggtgtttcttttatcattctttatgtggttcat |
375 |
Q |
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| T |
28072059 |
tttgatggtaaattatcatctggtcttatgtgtttcttttatcattctttctgtggttcat |
28072119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 325
Target Start/End: Original strand, 45926984 - 45927200
Alignment:
| Q |
109 |
tatcattcgagaaggggtttgtcattgtgattcgtgcatgccaattgttagcccaaaagaatgatggaataatattggttgggctggcgggtccttcggg |
208 |
Q |
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||||||| ||||| || || ||||||| ||||||||||| || || || || ||||| ||||||||||| || ||||| || | || |||||||| || |
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| T |
45926984 |
tatcatttgagaaaggattcttcattgttattcgtgcatgtcagttattggctcaaaacaatgatggaattattttggtaggagttgctggtccttctgg |
45927083 |
T |
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| Q |
209 |
agctggaaagactatatttaccgaaaagatactcaacttcatgcctagcattgttgtcatttcaatggatagttacaatgatgctagtcgaattgttgat |
308 |
Q |
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|||||| || ||| | ||||| || ||| | ||| || ||||| || |||| ||| ||| | ||||||| ||| |||||| |||||||||| ||||| |
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| T |
45927084 |
agctggcaaaactgtttttactgataaggttttcagttttatgccaagtattgctgttattactatggataattataatgattctagtcgaatcattgat |
45927183 |
T |
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| Q |
309 |
ggcaactttgatggtaa |
325 |
Q |
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| T |
45927184 |
ggaaactttgatggtaa |
45927200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 29534935 - 29535120
Alignment:
| Q |
143 |
tgcatgccaattgttagcccaaaagaatgatggaataatattggttgggctggcgggtccttcgggagctggaaagactatatttaccgaaaagatactc |
242 |
Q |
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||||| ||||||||| | ||| || ||||||||||| ||||| | ||| | | ||||||||| || |||||||||||| | ||| ||||||||||| || |
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| T |
29534935 |
tgcattccaattgttggtccagaaaaatgatggaatgatattaataggggtagggggtccttctggggctggaaagactgtgtttgccgaaaagatattc |
29535034 |
T |
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| Q |
243 |
aacttcatgcctagcattgttgtcatttcaatggatagttacaatgatgctagtcgaattgttgatggcaactttgatggtaaatc |
328 |
Q |
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|||| |||||| |||| |||||||||||||| | |||||||||| ||||||||||||| ||||| ||||| ||||||||||| |
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| T |
29535035 |
aactccatgcccgatattgcagtcatttcaatggacaattacaatgattctagtcgaattgtcgatggaaacttcgatggtaaatc |
29535120 |
T |
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