View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_high_58 (Length: 351)

Name: NF16533_high_58
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_high_58
NF16533_high_58
[»] chr4 (14 HSPs)
chr4 (34-331)||(2375995-2376294)
chr4 (94-166)||(2360921-2360993)
chr4 (34-158)||(2381314-2381438)
chr4 (120-166)||(2380051-2380097)
chr4 (39-166)||(2460600-2460727)
chr4 (39-93)||(2367678-2367732)
chr4 (120-166)||(2390934-2390980)
chr4 (34-95)||(2486305-2486366)
chr4 (119-165)||(2525951-2525997)
chr4 (123-165)||(2536689-2536731)
chr4 (34-160)||(2547530-2547656)
chr4 (119-165)||(5101951-5101997)
chr4 (119-165)||(5106223-5106269)
chr4 (39-93)||(12126883-12126937)
[»] chr8 (1 HSPs)
chr8 (34-166)||(39516855-39516987)
[»] chr3 (1 HSPs)
chr3 (39-100)||(51763147-51763208)
[»] chr5 (2 HSPs)
chr5 (43-158)||(39252840-39252955)
chr5 (39-91)||(32268773-32268825)
[»] chr1 (2 HSPs)
chr1 (39-102)||(15837956-15838019)
chr1 (49-101)||(52085555-52085607)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 34 - 331
Target Start/End: Complemental strand, 2376294 - 2375995
Alignment:
Q  34 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2376294 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgat 2376195  T
Q  134 gcattcccataactcatctggtaaatatgaacagactgctgcccttgctcgcttcataggg--nnnnnnnctgcgttggatttggatgatgatgatgctg 231  Q
    | ||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||         |||| |||||||||||||||||||||||||    
T  2376194 gtattcccataactcatatggtaaatatgaacacactgccgcccttgctcggttcatagggtttttttttctgccttggatttggatgatgatgatgctg 2376095  T
Q  232 ccaccattgttacaaagtaaccagtttctctctatttttccctaatctttgtaactacctccctatttttctgacagtacctcccaatttttacgttatc 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||||||| |||||| ||||||||    
T  2376094 ccaccattgttacaaagtaaccagtttctctctatttttccctaatccttgtaactaccaccctctttttctgtaagtacctcctaattttgacgttatc 2375995  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 2360993 - 2360921
Alignment:
Q  94 acttcaaagaggggttgtcgccggagaggaatttgatgatgcattcccataactcatctggtaaatatgaaca 166  Q
    ||||||||| |||||| ||||||  ||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  2360993 acttcaaagtggggttatcgccgctgaggaatttgatgatgtgttcccatagctcatctggtaaatacgaaca 2360921  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 2381438 - 2381314
Alignment:
Q  34 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgat 133  Q
    |||| |||||||||| || ||||||||| ||||| ||   ||||||||||||||| |||||||| |||| |  || ||| ||   |||||||||||||||    
T  2381438 tgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgat 2381339  T
Q  134 gcattcccataactcatctggtaaa 158  Q
    | |||||||||  ||||||||||||    
T  2381338 gtattcccataggtcatctggtaaa 2381314  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 2380097 - 2380051
Alignment:
Q  120 aggaatttgatgatgcattcccataactcatctggtaaatatgaaca 166  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2380097 aggaatttgatgatgtattcccataactcatctggtaaatttgaaca 2380051  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 2460600 - 2460727
Alignment:
Q  39 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatgcatt 138  Q
    |||||||||| ||| |||||||||||||| ||   ||||||||| ||||||||||| || |||| | ||| || | ||  ||||||||||| |||||  |    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagtgtggtggttgtcgtcgaggaatttgaagatgctct 2460699  T
Q  139 cccataactcatctggtaaatatgaaca 166  Q
    ||||||  || |||||||||| ||||||    
T  2460700 cccatatttcctctggtaaatgtgaaca 2460727  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 2367732 - 2367678
Alignment:
Q  39 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 93  Q
    |||||||||| |||||||||||||||||||||   ||||||||||||||| ||||    
T  2367732 gagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 2390980 - 2390934
Alignment:
Q  120 aggaatttgatgatgcattcccataactcatctggtaaatatgaaca 166  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  2390980 aggaatttgatgatgtattcccacaactcatctggtaaatttgaaca 2390934  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 2486305 - 2486366
Alignment:
Q  34 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagac 95  Q
    ||||||||||||||| ||||||||||||||| |||||   ||| ||||||| ||||||||||    
T  2486305 tgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagagac 2486366  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 2525951 - 2525997
Alignment:
Q  119 gaggaatttgatgatgcattcccataactcatctggtaaatatgaac 165  Q
    ||||||||||| ||||  |||||||||||| ||||||||||||||||    
T  2525951 gaggaatttgaagatgtgttcccataactcctctggtaaatatgaac 2525997  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 2536689 - 2536731
Alignment:
Q  123 aatttgatgatgcattcccataactcatctggtaaatatgaac 165  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||    
T  2536689 aatttgaagatgtattcccataactcctctggtaaatatgaac 2536731  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 2547530 - 2547656
Alignment:
Q  34 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgat 133  Q
    |||| ||||| |||| ||||||||||||||| |||||   |||||||||||||||||| || || |||| |   | || | |   ||||||||||| |||    
T  2547530 tgactgagaaccggagacggttggtgatggacagaaactgtttggagacgatggagagcgattttaaagcgtcctcgtagacattgaggaatttgaagat 2547629  T
Q  134 gcattcccataactcatctggtaaata 160  Q
    |   |||||||||||||||||||||||    
T  2547630 gtgctcccataactcatctggtaaata 2547656  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 5101997 - 5101951
Alignment:
Q  119 gaggaatttgatgatgcattcccataactcatctggtaaatatgaac 165  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||    
T  5101997 gaggaatttgaagatgcgctcccataactcatccggtaaatatgaac 5101951  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 5106269 - 5106223
Alignment:
Q  119 gaggaatttgatgatgcattcccataactcatctggtaaatatgaac 165  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||    
T  5106269 gaggaatttgaagatgccctcccataactcatccggtaaatatgaac 5106223  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 12126883 - 12126937
Alignment:
Q  39 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 93  Q
    |||||| ||| |||||||||||||||||||||   ||||||||| ||||||||||    
T  12126883 gagaataggagacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 39516855 - 39516987
Alignment:
Q  34 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgat 133  Q
    |||| ||||||| || |||||||||||||| ||||||   | |||||||||||||||||||||| |||| | ||||||| |||  ||||||||||| |||    
T  39516855 tgacggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttgaagat 39516954  T
Q  134 gcattcccataactcatctggtaaatatgaaca 166  Q
      | |||||||  || || ||||||||||||||    
T  39516955 agactcccatatatcctccggtaaatatgaaca 39516987  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 51763208 - 51763147
Alignment:
Q  39 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 100  Q
    |||||||||||||||| |||||||||||| ||   |||||| |||||||||||||| |||||    
T  51763208 gagaatcggaaacggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaa 51763147  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 39252955 - 39252840
Alignment:
Q  43 atcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggagaggaatttgatgatgcattccca 142  Q
    |||||| ||||||| |||||||||||||   | |||||||||  ||||  |||||||||| | | |||||  ||  | ||||||| | ||||||||||||    
T  39252955 atcggagacggttgctgatggagagaaactgtatggagacgaaagagacggacttcaaagtgtgattgtctgcgttgtggaatttcaagatgcattccca 39252856  T
Q  143 taactcatctggtaaa 158  Q
    |||||| |||||||||    
T  39252855 taactcctctggtaaa 39252840  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 32268773 - 32268825
Alignment:
Q  39 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagag 91  Q
    |||||||| | |||||||||||||||||| ||   ||||||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 15838019 - 15837956
Alignment:
Q  39 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaag 102  Q
    |||||||||| |||||||||||||||||||||   ||||||||| || ||||| ||||| ||||    
T  15838019 gagaatcggagacggttggtgatggagagaaactgtttggagaccatcgagagggacttgaaag 15837956  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 52085555 - 52085607
Alignment:
Q  49 aacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaa 101  Q
    |||||||||||||||| || ||  |||||||||||||||| ||||||| ||||    
T  52085555 aacggttggtgatggaaaggaactttttggagacgatggaaagagactccaaa 52085607  T

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