View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_high_63 (Length: 320)

Name: NF16533_high_63
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_high_63
NF16533_high_63
[»] chr5 (1 HSPs)
chr5 (1-306)||(18964410-18964694)
[»] chr6 (4 HSPs)
chr6 (1-272)||(17369867-17370135)
chr6 (97-194)||(20770933-20771030)
chr6 (1-134)||(6921075-6921208)
chr6 (1-33)||(6947658-6947690)
[»] chr7 (5 HSPs)
chr7 (1-272)||(14076856-14077127)
chr7 (1-272)||(14386884-14387155)
chr7 (73-134)||(22063902-22063963)
chr7 (65-134)||(1985680-1985749)
chr7 (73-134)||(22100753-22100814)
[»] chr4 (1 HSPs)
chr4 (73-198)||(53775101-53775226)
[»] scaffold0097 (1 HSPs)
scaffold0097 (79-134)||(16111-16164)
[»] chr2 (1 HSPs)
chr2 (79-134)||(20712272-20712325)
[»] scaffold0867 (1 HSPs)
scaffold0867 (73-134)||(4418-4479)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 18964694 - 18964410
Alignment:
Q  1 tataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgctgaaagcttgatatctacttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18964694 tataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgttgaaagcttgatatctacttgtt 18964595  T
Q  101 gaaagtaagttcctctttgatgatttacttgtttaagcttgtgttaattcatatgtttgttttgatttgatagcattgttgaatgattatctattttatc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||    
T  18964594 gaaagtaagttcctctttgatgacttacttgtttaagcttgtgttaattcatatgtttgttttg---------------------attatctattttatc 18964516  T
Q  201 gtctactttacttcggttttctttttgtatgccaagccagtttgtaagctttgcatgaatgataaccatggtgtggtagttgaaagctaaaaatgctact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18964515 gtctactttacttcggttttctttttgtatgccaagccagtttgtaagctttgcatgaatgataaccatggtgtggtagttgaaagctaaaattgctact 18964416  T

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Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 17369867 - 17370135
Alignment:
Q  1 tataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgctgaaagcttgatatctacttgtt 100  Q
    |||||||||||| |||||||||||||||||||||||||||| | || ||   |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  17369867 tataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctatgttgaaagcttggtatctacttgtt 17369966  T
Q  101 gaaagtaagttcctctttgatgatttacttgtttaagcttgtgttaattcatatgtttgttttgatttgatagcattgttgaatgattatctattttatc 200  Q
    ||||||||||| ||||| ||||||||||||   |||  ||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17369967 gaaagtaagttactcttcgatgatttactt---taaatttgtgttaaatcattagtttgttttgatttgattgcattgttgaatgattatctattttatc 17370063  T
Q  201 gtctactttacttcggttttctttttgtatgccaagccagtttgtaagctttgcatgaatgataaccatggt 272  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  17370064 gtctactttaattcggttttctttttgtatgccaagcctgtttgtaagttttgcatggatgataaccatggt 17370135  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 20770933 - 20771030
Alignment:
Q  97 tgttgaaagtaagttcctctttgatgatttacttgtttaagcttgtgttaattcatatgtttgttttgatttgatagcattgttgaatgattatctat 194  Q
    ||||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||| | |||| || ||||| | |||| |||||||||| ||||    
T  20770933 tgttgaaagtaagttcctcttcgatgatttacttgtttgaatttgtgttaattcatatgatagtttcgacttgatcgtattggtgaatgattaactat 20771030  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6921208 - 6921075
Alignment:
Q  1 tataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgctgaaagcttgatatctacttgtt 100  Q
    |||||||||| ||||||||||| ||||| |||||||| |||   |||||  || |||    || ||||||| |||| |||||||||| |||| |||| ||    
T  6921208 tataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatgttgaaagcttggtatcgacttctt 6921109  T
Q  101 gaaagtaagttcctctttgatgatttacttgttt 134  Q
    |||||||||||  | || ||||||||||||||||    
T  6921108 gaaagtaagtttttgttcgatgatttacttgttt 6921075  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6947690 - 6947658
Alignment:
Q  1 tataattggagagataatagagtaaagaaaatt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  6947690 tataattggagagataatagagtaaagagaatt 6947658  T

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Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 14076856 - 14077127
Alignment:
Q  1 tataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgctgaaagcttgatatctacttgtt 100  Q
    |||||||||||||||||||||||||||| |||| |||||||   || ||  || |||  |  |||||||   |||| |||||||||| |||| |||| |     
T  14076856 tataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtatcgactttta 14076955  T
Q  101 gaaagtaagttcctctttgatgatttacttgtttaagcttgtgttaattcatatgtttgttttgatttgatagcattgttgaatgattatctattttatc 200  Q
    ||||||||||||||||| |||||||||| ||||| |   |||||||||||||||| | || ||  |||||| | |||||| |||||||||  ||||||||    
T  14076956 gaaagtaagttcctcttcgatgatttacatgtttgaatctgtgttaattcatatgatagtattagtttgattgtattgttaaatgattataaattttatc 14077055  T
Q  201 gtctactttacttcggttttctttttgtatgccaagccagtttgtaagctttgcatgaatgataaccatggt 272  Q
    ||| ||||| ||| |||| |||||||| |||||||| | |||||||||||  |||||||| |||||||||||    
T  14077056 gtcaacttttctttggttctctttttgcatgccaagactgtttgtaagctaagcatgaattataaccatggt 14077127  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 14386884 - 14387155
Alignment:
Q  1 tataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgctgaaagcttgatatctacttgtt 100  Q
    |||||||||||||||||||||||||||| |||| |||||||   || ||  || |||  |  |||||||   |||| |||||||||| |||| |||| |     
T  14386884 tataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtatcgactttta 14386983  T
Q  101 gaaagtaagttcctctttgatgatttacttgtttaagcttgtgttaattcatatgtttgttttgatttgatagcattgttgaatgattatctattttatc 200  Q
    ||||||||||||||||| |||||||||| ||||| |   |||||||||||||||| | || ||  |||||| | |||||| |||||||||  ||||||||    
T  14386984 gaaagtaagttcctcttcgatgatttacatgtttgaatctgtgttaattcatatgatagtattagtttgattgtattgttaaatgattataaattttatc 14387083  T
Q  201 gtctactttacttcggttttctttttgtatgccaagccagtttgtaagctttgcatgaatgataaccatggt 272  Q
    ||| ||||| ||| |||| |||||||| |||||||| | |||||||||||  |||||||| |||||||||||    
T  14387084 gtcaacttttctttggttctctttttgcatgccaagactgtttgtaagctaagcatgaattataaccatggt 14387155  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 22063902 - 22063963
Alignment:
Q  73 tatgctgaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgttt 134  Q
    |||| |||||||||||| |||  |||||||||||||||||||||   |||||||||||||||    
T  22063902 tatgttgaaagcttgatttcttattgttgaaagtaagttcctctacaatgatttacttgttt 22063963  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 1985749 - 1985680
Alignment:
Q  65 ccaagggctatgctgaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgttt 134  Q
    ||||||| || | |||||||||| |||| | || ||||| ||||||| ||||| ||||||||||||||||    
T  1985749 ccaagggatacgttgaaagcttggtatcgatttcttgaaggtaagtttctcttcgatgatttacttgttt 1985680  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 22100753 - 22100814
Alignment:
Q  73 tatgctgaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgttt 134  Q
    |||| |||||||||||| |||  ||||||||||||||||||| |   |||||||||||||||    
T  22100753 tatgttgaaagcttgatttcttattgttgaaagtaagttcctttacaatgatttacttgttt 22100814  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 53775101 - 53775226
Alignment:
Q  73 tatgctgaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgtttaagcttgtgttaattcatatgtttgttttgatttgata 172  Q
    |||| |||||||||| |||| || |||||||||||||||||||||  | ||||||||||||| |  ||||||||||| ||||| | |||||||||||||     
T  53775101 tatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatttgtgttaatttatatgatagttttgatttgatt 53775200  T
Q  173 gcattgttgaatgattatctatttta 198  Q
    | |||||||||||||| ||| |||||    
T  53775201 gtattgttgaatgattctctctttta 53775226  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 16164 - 16111
Alignment:
Q  79 gaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgttt 134  Q
    ||||||||| | || ||||||||||||||||||||||||  |||||||||||||||    
T  16164 gaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgttt 16111  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 20712325 - 20712272
Alignment:
Q  79 gaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgttt 134  Q
    ||||||||| | || ||||||||||||||||||||||||  |||||||||||||||    
T  20712325 gaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgttt 20712272  T

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Target: scaffold0867 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 4479 - 4418
Alignment:
Q  73 tatgctgaaagcttgatatctacttgttgaaagtaagttcctctttgatgatttacttgttt 134  Q
    |||| |||||||||||| |||  ||||||||||||||||||| |   |||||||||||||||    
T  4479 tatgttgaaagcttgatttcttattgttgaaagtaagttcctttacaatgatttacttgttt 4418  T

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