View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_high_64 (Length: 320)

Name: NF16533_high_64
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_high_64
NF16533_high_64
[»] chr8 (20 HSPs)
chr8 (15-156)||(8806539-8806675)
chr8 (173-285)||(8806759-8806869)
chr8 (111-260)||(12361184-12361335)
chr8 (160-260)||(26473730-26473830)
chr8 (101-213)||(43368619-43368731)
chr8 (101-227)||(27645929-27646055)
chr8 (111-176)||(2364389-2364454)
chr8 (160-245)||(7918424-7918509)
chr8 (103-144)||(30627872-30627913)
chr8 (112-261)||(37461133-37461281)
chr8 (116-171)||(8535989-8536044)
chr8 (160-243)||(14949875-14949958)
chr8 (250-283)||(2107443-2107476)
chr8 (219-260)||(34213566-34213607)
chr8 (111-252)||(39551138-39551279)
chr8 (183-252)||(39561542-39561611)
chr8 (113-261)||(11415145-11415293)
chr8 (180-260)||(11795084-11795164)
chr8 (100-164)||(14926900-14926964)
chr8 (101-141)||(38602438-38602478)
[»] chr4 (19 HSPs)
chr4 (113-261)||(2996564-2996712)
chr4 (112-238)||(27123282-27123408)
chr4 (114-260)||(30207503-30207649)
chr4 (160-260)||(27970050-27970150)
chr4 (161-260)||(23819081-23819180)
chr4 (175-260)||(11264293-11264378)
chr4 (160-256)||(46415770-46415866)
chr4 (102-141)||(15173223-15173262)
chr4 (172-259)||(50800020-50800106)
chr4 (117-252)||(56007679-56007814)
chr4 (216-258)||(2733315-2733357)
chr4 (100-190)||(6428080-6428170)
chr4 (111-245)||(33534098-33534232)
chr4 (101-227)||(53315351-53315477)
chr4 (101-253)||(7367973-7368126)
chr4 (115-184)||(18628486-18628555)
chr4 (101-225)||(6987660-6987784)
chr4 (250-290)||(19422331-19422371)
chr4 (101-141)||(27043749-27043789)
[»] chr2 (16 HSPs)
chr2 (111-260)||(9478291-9478440)
chr2 (101-245)||(15120190-15120334)
chr2 (161-257)||(28933819-28933914)
chr2 (166-260)||(10285852-10285946)
chr2 (111-245)||(32821816-32821950)
chr2 (101-189)||(18961953-18962044)
chr2 (172-243)||(34652026-34652097)
chr2 (112-190)||(43456637-43456715)
chr2 (101-194)||(7862818-7862909)
chr2 (166-259)||(33941902-33941995)
chr2 (160-245)||(43065428-43065513)
chr2 (111-224)||(43985237-43985350)
chr2 (160-264)||(1742010-1742114)
chr2 (173-225)||(1939323-1939375)
chr2 (101-193)||(13866937-13867029)
chr2 (112-176)||(17775396-17775460)
[»] chr7 (14 HSPs)
chr7 (117-252)||(39360023-39360158)
chr7 (117-252)||(39334193-39334328)
chr7 (113-219)||(33894660-33894766)
chr7 (111-177)||(44151405-44151471)
chr7 (180-257)||(5628565-5628641)
chr7 (100-225)||(22387814-22387939)
chr7 (114-170)||(25014031-25014087)
chr7 (172-227)||(12234879-12234934)
chr7 (201-259)||(3610759-3610817)
chr7 (101-187)||(23214920-23215006)
chr7 (166-223)||(28520996-28521053)
chr7 (113-214)||(36598287-36598388)
chr7 (113-189)||(8094369-8094445)
chr7 (101-141)||(19302482-19302522)
[»] chr5 (7 HSPs)
chr5 (114-245)||(37611147-37611278)
chr5 (114-245)||(37787877-37788008)
chr5 (158-260)||(14295498-14295600)
chr5 (111-184)||(8090004-8090077)
chr5 (101-139)||(17369316-17369354)
chr5 (101-183)||(31208541-31208623)
chr5 (101-186)||(37112197-37112281)
[»] chr6 (16 HSPs)
chr6 (112-238)||(2460081-2460207)
chr6 (101-260)||(281767-281926)
chr6 (159-253)||(5328972-5329066)
chr6 (114-260)||(32171459-32171605)
chr6 (160-260)||(1402988-1403088)
chr6 (160-232)||(1669776-1669848)
chr6 (180-256)||(25100039-25100115)
chr6 (114-261)||(8420129-8420276)
chr6 (100-139)||(13908353-13908392)
chr6 (210-260)||(12757546-12757596)
chr6 (166-260)||(30523652-30523745)
chr6 (172-225)||(9667975-9668028)
chr6 (219-260)||(14656282-14656323)
chr6 (166-259)||(30523930-30524023)
chr6 (180-252)||(2117403-2117475)
chr6 (101-141)||(35069531-35069571)
[»] chr1 (17 HSPs)
chr1 (157-259)||(15515534-15515636)
chr1 (100-222)||(4868430-4868551)
chr1 (115-237)||(32515374-32515496)
chr1 (113-261)||(15581245-15581393)
chr1 (111-173)||(27807194-27807256)
chr1 (160-260)||(39270403-39270503)
chr1 (201-256)||(15558213-15558268)
chr1 (201-260)||(33976678-33976737)
chr1 (111-261)||(46504147-46504297)
chr1 (101-190)||(23373232-23373321)
chr1 (101-154)||(24460320-24460373)
chr1 (111-252)||(27140478-27140619)
chr1 (151-260)||(37811844-37811953)
chr1 (113-252)||(4549472-4549612)
chr1 (100-140)||(6292604-6292644)
chr1 (111-187)||(16980868-16980944)
chr1 (103-139)||(29793619-29793655)
[»] chr3 (24 HSPs)
chr3 (100-260)||(36646300-36646460)
chr3 (113-187)||(22667468-22667542)
chr3 (113-187)||(22724107-22724181)
chr3 (101-141)||(34610725-34610765)
chr3 (113-245)||(37273141-37273273)
chr3 (114-261)||(41724202-41724350)
chr3 (114-245)||(31010409-31010540)
chr3 (114-253)||(31710819-31710958)
chr3 (114-253)||(31711074-31711213)
chr3 (160-253)||(54775126-54775219)
chr3 (137-225)||(2175804-2175892)
chr3 (167-247)||(30923883-30923963)
chr3 (161-261)||(43115047-43115147)
chr3 (149-260)||(14548688-14548799)
chr3 (166-260)||(48286794-48286888)
chr3 (112-178)||(50211809-50211875)
chr3 (160-225)||(21574517-21574582)
chr3 (113-190)||(24624272-24624349)
chr3 (160-253)||(51130749-51130842)
chr3 (165-225)||(2152161-2152221)
chr3 (250-286)||(16790205-16790241)
chr3 (101-225)||(20192525-20192649)
chr3 (111-243)||(26542546-26542677)
chr3 (181-257)||(40665424-40665500)
[»] scaffold0020 (1 HSPs)
scaffold0020 (180-260)||(159971-160051)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 8806539 - 8806675
Alignment:
Q  15 cttttatttgcattttcactactttctggctctagtttagaaattaatggttttgttttgtatacatgtcgaatgaagtcaatgattgtttgtatggact 114  Q
    |||||||||||| |||||| |||||||||||||| |||| |||| ||||||||     ||||||||||| |||||||||||||||||||||| || ||      
T  8806539 cttttatttgcagtttcacaactttctggctctactttataaatgaatggttt-----tgtatacatgttgaatgaagtcaatgattgtttggattgatg 8806633  T
Q  115 tatttgaacttatctactgacataagtactcgtaagactggt 156  Q
    |||||| ||||||||||||||||||  ||| |||||||||||    
T  8806634 tatttgtacttatctactgacataaacacttgtaagactggt 8806675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 8806759 - 8806869
Alignment:
Q  173 aacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatatataagaacttat 272  Q
    |||||| |||||||||||||| |||||| || |||| | ||||||||||||||  |||||  ||||||||||| | ||||||  ||  ||||| ||||||    
T  8806759 aacaacttatgacatgtctataagctgcatttaacttacttctataagctctc--tgatagtttacgaaaacaacatataacccatgcataagcacttat 8806856  T
Q  273 atgataagcgctt 285  Q
    |||||||| ||||    
T  8806857 atgataagtgctt 8806869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 12361335 - 12361184
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagag--tttatgaaaacaacatatgacatgtctattagctgctttcaact 208  Q
    |||||||||||||||||||||||| ||||||||| || |||||  | |||||||   ||||  ||| | | ||||||||||| || ||||| ||||||||    
T  12361335 gacttatttgaacttatctactgatataagtacttgttagactctttgagagagatcttatagaaatagcttatgacatgtccataagctgttttcaact 12361236  T
Q  209 aatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
     ||||| || |||||||    ||| |||| ||||||| |||||| |||||||    
T  12361235 tatttccattagctctcctgaataacttatgaaaacagcttatagcttatat 12361184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 26473730 - 26473830
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||| ||||||||||| | |||||||||||||| ||||  ||| |||| ||||  |||||||||||| |||| |||| ||||||| |||| |||| |||    
T  26473730 gagagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaacttacaactcata 26473829  T
Q  260 t 260  Q
    |    
T  26473830 t 26473830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 43368619 - 43368731
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || ||||||||||| |||||||||| ||||||| | | || |||||||| |  | || ||||||||||||| ||||||||||  |||||||      
T  43368619 tgtttggattgacttatttgatcttatctactaacataagcatttgtgagactggttgtaacagcttatgaaaacaacttatgacatgttcattagctat 43368718  T
Q  201 tttcaactaattt 213  Q
    |||||||| ||||    
T  43368719 tttcaacttattt 43368731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 27646055 - 27645929
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || ||| ||||| |||||| ||| || || ||| | | ||||||| | | ||||||| ||||| | ||||| |||||||| ||||| ||||      
T  27646055 tgtttggattgacgtatttaaacttacctattggcaaaagcatttgtaagaccgtttgagagagcttatgcatacaacttatgacatatctataagctat 27645956  T
Q  201 tttcaactaatttctataagctctcta 227  Q
    |||||||| ||||||||||||||||||    
T  27645955 tttcaacttatttctataagctctcta 27645929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 2364389 - 2364454
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaaca 176  Q
    ||||||||||||||||||| |||||||||||||| || |||||| | |  |||| |||||||||||    
T  2364389 gacttatttgaacttatcttctgacataagtacttgtgagactgtttggaagagattatgaaaaca 2364454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 7918424 - 7918509
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaaca 245  Q
    ||||| ||||||||||||| || |||||||  || ||||| || ||||| ||||| |||||||||| | |||| ||||||||||||    
T  7918424 gagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataagctctccaagatagcttacgaaaaca 7918509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 30627872 - 30627913
Alignment:
Q  103 tttgtatggacttatttgaacttatctactgacataagtact 144  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  30627872 tttgtattgacttatttcaacttatctactgacataagtact 30627913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 261
Target Start/End: Complemental strand, 37461281 - 37461133
Alignment:
Q  112 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaat 211  Q
    |||||||||||||||||||||||| |||  ||| | |||||||   ||||||||||||| ||| ||| |||||||||| | |  || | |||||||| ||    
T  37461281 acttatttgaacttatctactgac-taaacactagcaagactgtatgagagagtttatggaaataacttatgacatgtttgtaggccgatttcaacttat 37461183  T
Q  212 ttctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    || |||||| | ||  ||||| |||| ||||||| | |||| ||||||||    
T  37461182 ttttataagttatccgtgatagcttatgaaaacaacatatagcttatata 37461133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 8535989 - 8536044
Alignment:
Q  116 atttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatga 171  Q
    ||||||| ||||||||||||||||||||| || |||||| | | ||||||||||||    
T  8535989 atttgaatttatctactgacataagtacttgtgagactgtttgggagagtttatga 8536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 14949958 - 14949875
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaa 243  Q
    ||||| ||||||||| ||| ||||||||||| || ||||| ||||| || |||||||||| |||| || |||| |||| |||||    
T  14949958 gagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctctttaggatagcttatgaaaa 14949875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 2107443 - 2107476
Alignment:
Q  250 ataacttatatataagaacttatatgataagcgc 283  Q
    |||||||||| |||||||||||||||||||||||    
T  2107443 ataacttatacataagaacttatatgataagcgc 2107476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 34213566 - 34213607
Alignment:
Q  219 agctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||||||||||||| |||||||||||| || |||||||||||    
T  34213566 agctctctatgataacttacgaaaacaactcataacttatat 34213607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 39551138 - 39551279
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    |||||||||||  |||||||| || ||||| | | || | |||| | | |||| |||||| ||||||| ||||||||||| |  ||||| ||| |||| |    
T  39551138 gacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatgtccaaaagctgtttttaactta 39551237  T
Q  211 tttctataagctctctatgatatcttacgaaaacaccttata 252  Q
    ||| ||||||||||| | || | |||| ||||||| ||||||    
T  39551238 tttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 39561542 - 39561611
Alignment:
Q  183 gacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttata 252  Q
    ||||||||| ||||||| ||||| || ||||| ||||||| |  |||||| |||||||||||| ||||||    
T  39561542 gacatgtctgttagctgttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttata 39561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 11415293 - 11415145
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 212  Q
    ||||||||  ||||| |||| ||||||||||| || ||| || |  |||||||||||| ||||| | ||| ||||||| || ||||  | ||| || |||    
T  11415293 cttatttgtgcttatttactaacataagtacttgtgagattgttttagagagtttatggaaacagcttataacatgtccataagctattctcagcttatt 11415194  T
Q  213 tctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    |  | || ||||||| |||| |||| ||||||| | |||||||||||||    
T  11415193 ttcacaaactctctaggatagcttatgaaaacagcgtataacttatata 11415145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 11795164 - 11795084
Alignment:
Q  180 tatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    ||||||||||| || | ||| ||||| || ||||| |||||||||| || ||| |||| |||| || ||||||||||||||    
T  11795164 tatgacatgtccataacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatat 11795084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 14926900 - 14926964
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagag 164  Q
    ||||||| || ||||||||||||||||| ||||| |||||| ||| || |||||| | |||||||    
T  14926900 ttgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagag 14926964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 38602478 - 38602438
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagt 141  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataagt 38602438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 2996712 - 2996564
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 212  Q
    ||||||||||||||| || ||||||||| |||  | |||||| | ||||||| ||||||||||||| ||||||||||| || ||||  |||||||| |||    
T  2996712 cttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttatt 2996613  T
Q  213 tctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    |  ||| |||||| | |||| |||| ||||||| |||||||||||||||    
T  2996612 ttcatacgctctccaagatagcttatgaaaacaacttataacttatata 2996564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 27123282 - 27123408
Alignment:
Q  112 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaat 211  Q
    |||||||||| |||||  |||  |||||||||| || |||||| | ||||||| ||||| ||||||| |||||||||||| | || || |||||||| ||    
T  27123282 acttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttat 27123381  T
Q  212 ttctataagctctctatgatatcttac 238  Q
    ||| |||||||||| || ||| |||||    
T  27123382 ttccataagctctccataatagcttac 27123408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 30207503 - 30207649
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    ||||||||  |||||||| | |||||  ||| || |||||| ||||||||| |||| | |||| |||||||||||||| | ||||| ||||| || ||||    
T  30207503 ttatttgattttatctacaggcataaccacttgtgagactgatcgagagagcttataagaacagcatatgacatgtctgtaagctgttttcagcttattt 30207602  T
Q  214 ctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    | |||| ||||||| | || |||| ||||||| |||||| |||||||    
T  30207603 ccataatctctctaaggtagcttatgaaaacaacttatagcttatat 30207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 27970150 - 27970050
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt-tctataagctctctatgatatcttacgaaaacaccttataacttat 258  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||| | || || || |||||||||| |||| | |||| |||||||  |||||||||||    
T  27970150 gagagtttatgaaaacaacttatgacatgtctataagctgttttc-agtacttatccataagctctccatgacagcttatgaaaacaagttataacttat 27970052  T
Q  259 at 260  Q
    ||    
T  27970051 at 27970050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 23819180 - 23819081
Alignment:
Q  161 agagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||||||| ||||||| | ||||||||||| || || || ||||| || |||||||||||||||  | |||| |||| |||||||  |||||||||||||    
T  23819180 agagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaacatgttataacttatat 23819081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 11264378 - 11264293
Alignment:
Q  175 caacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||| ||||||||||| || | ||| |||||||| ||||| |||||||||||| |||  |||| ||||||| |||||||| |||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatatat 11264293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 46415770 - 46415866
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactt 256  Q
    ||||||||||| ||||||| ||||||||||| || || || ||||| |||||||   ||||||||| | |||| |||| ||||| | ||||||||||    
T  46415770 gagagtttatgcaaacaacctatgacatgtccataagttgttttcagctaattttactaagctctcgaggatagcttatgaaaagaacttataactt 46415866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 15173223 - 15173262
Alignment:
Q  102 gtttgtatggacttatttgaacttatctactgacataagt 141  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagt 15173262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 50800020 - 50800106
Alignment:
Q  172 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||||| |||||||||||||| ||||| ||||| || ||||| | ||| |||| |||||| |||| ||||||| |||||| ||||||    
T  50800020 aaacaacttatgacatgtctataagctgttttcagcttatttcca-aagttctccatgatagcttaagaaaacagcttatagcttata 50800106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 56007814 - 56007679
Alignment:
Q  117 tttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttcta 216  Q
    ||||||||||||||||| |||||  ||| ||||||||| | ||||||| | ||  ||  ||| ||||||||||| |||  ||  ||| |||| |||||||    
T  56007814 tttgaacttatctactggcataatcacttgtaagactgtttgagagagctaatacaagtaacttatgacatgtcgattgtctattttgaacttatttcta 56007715  T
Q  217 taagctctctatgatatcttacgaaaacaccttata 252  Q
    ||||||||| | |||| ||||  |||||| ||||||    
T  56007714 taagctctccaagataacttataaaaacaacttata 56007679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 2733357 - 2733315
Alignment:
Q  216 ataagctctctatgatatcttacgaaaacaccttataacttat 258  Q
    |||||||||||||||||||||| ||||||| || |||||||||    
T  2733357 ataagctctctatgatatcttatgaaaacaactaataacttat 2733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 6428170 - 6428080
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 190  Q
    ||||||| || ||||||||||| ||||| || ||  ||||| ||| || |||| | | ||||||| ||||||||||||| |||||||||||    
T  6428170 ttgtttgaattgacttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgtc 6428080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 33534098 - 33534232
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    ||||||||||| |||||||| ||||||||||||| || ||| |  | ||||||| ||||||||||||  | |||||| || || || || ||||| || |    
T  33534098 gacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagctta 33534197  T
Q  211 tttctataagctctctatgatatcttacgaaaaca 245  Q
    |||  |||||||||| |  |||  |||||||||||    
T  33534198 ttttcataagctctcaaaaataatttacgaaaaca 33534232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 53315477 - 53315351
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || ||||||||||| |||||| ||||  ||||| ||   |||||||  | | ||||| ||||||||||||||||| ||||||| || ||||      
T  53315477 tgtttggattgacttatttgagcttatccactggtataagcacatataagactatttgtgagagcttatgaaaacaacatatcacatgtccataagctat 53315378  T
Q  201 tttcaactaatttctataagctctcta 227  Q
    ||| |||| ||||  ||||||||||||    
T  53315377 ttttaacttattttcataagctctcta 53315351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 7367973 - 7368126
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || |||||||||||  |||||||| | |||||   || || |||||| | | ||||| | ||||||||| | |||||||||| ||| ||||||    
T  7367973 tgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagctgc 7368072  T
Q  201 tttcaac-taatttctataagctctctatgatatcttacgaaaacaccttataa 253  Q
    ||||||| || ||| | |||||||||||  ||| |||| | ||||| |||||||    
T  7368073 tttcaacatattttttgtaagctctctagaatagcttatggaaacaacttataa 7368126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 18628486 - 18628555
Alignment:
Q  115 tatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatga 184  Q
    ||||||| |||||||||||||||||  ||| || |||||| | | ||||| ||||||||||||| |||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 6987660 - 6987784
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    ||||||||| |||||| ||||  |||||||||  |||||||  | || |||||| | | ||||| ||||| | ||||| ||||||||||| || | ||      
T  6987660 tgtttgtattgacttaattgagtttatctactagcataagtgtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactat 6987759  T
Q  201 tttcaactaatttctataagctctc 225  Q
    |||||||| ||||| ||||||||||    
T  6987760 tttcaacttatttccataagctctc 6987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 19422371 - 19422331
Alignment:
Q  250 ataacttatatataagaacttatatgataagcgcttaatta 290  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  19422371 ataacttatacataagcatttatatgataagcgcttaatta 19422331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 27043749 - 27043789
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagt 141  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataagt 27043789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 9478440 - 9478291
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    |||||||||||||||||||||  ||||||||||| ||  ||||| | ||||||||||||| ||||||| ||| ||||||| || ||||| ||||| || |    
T  9478440 gacttatttgaacttatctaccaacataagtacttgtgtgactgtttgagagagtttatgcaaacaacttattacatgtccataagctgttttcatctta 9478341  T
Q  211 tttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
     ||| || | ||||| | |||| |||||||| ||| | |||| |||||||    
T  9478340 cttccatcaactctccacgatagcttacgaacacagcatatagcttatat 9478291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 245
Target Start/End: Complemental strand, 15120334 - 15120190
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || ||||||||||||||||||||||  |||||  | | || |  ||| | | ||||| ||||| ||||||| ||||||||||  ||||||||     
T  15120334 tgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctgt 15120235  T
Q  201 tttcaactaatttctataagctctctatgatatcttacgaaaaca 245  Q
    ||| | || ||||  |||||||||| |||||| ||||||||||||    
T  15120234 tttaagcttattttgataagctctccatgatagcttacgaaaaca 15120190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 28933914 - 28933819
Alignment:
Q  161 agagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactta 257  Q
    |||| ||||||||||||| |||| ||||| |  |||||| |||||||| |||||||| ||||||||| |||| |||| |||||||  ||||||||||    
T  28933914 agagcttatgaaaacaacttatggcatgt-tcatagctgttttcaacttatttctatcagctctctaggatagcttatgaaaacaatttataactta 28933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 10285946 - 10285852
Alignment:
Q  166 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    ||||||||| ||| ||||||||||| || ||||| |||||||| ||||| ||||| |||||||| || |||| | ||||  |||||| |||||||    
T  10285946 ttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaacgacttatagcttatat 10285852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 32821950 - 32821816
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    ||||||||||| |||||||||  || |||| | | | ||||||| | |  |||||||||  ||||||| ||||||||||| || ||||| |||||  | |    
T  32821950 gacttatttgagcttatctaccaacgtaagcatttgcaagactgtttggaagagtttatagaaacaacttatgacatgtccataagctgttttcagttta 32821851  T
Q  211 tttctataagctctctatgatatcttacgaaaaca 245  Q
    |||||||||||||| || |||| |||| |||||||    
T  32821850 tttctataagctctttaggatagcttatgaaaaca 32821816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 18961953 - 18962044
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagt---actcgtaagactggtcgagagagtttatgaaaacaacatatgacatgt 189  Q
    |||||| || ||||||||||||| |||||| || ||||||    ||||||||| ||| ||| ||||| ||||||||||| ||||||||||||    
T  18961953 tgtttggattgacttatttgaacctatctattgtcataagctaaactcgtaaggctgttcgggagagcttatgaaaacagcatatgacatgt 18962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 34652026 - 34652097
Alignment:
Q  172 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaa 243  Q
    ||||||| ||||||||||| || ||||| |||||||| ||||| |||||||||| | |||| |||| |||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 43456637 - 43456715
Alignment:
Q  112 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 190  Q
    |||||||||||||||| |||| ||||||  ||| ||||||||| | || |||| || ||||||||||  ||||||||||    
T  43456637 acttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtc 43456715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 7862909 - 7862818
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctatt 194  Q
    |||||| || |||||||||||| |||||||||||| |||  |||  | |||||| ||||||||| ||| ||||||||| ||| |||||||||||    
T  7862909 tgtttggattgacttatttgaa-ttatctactgacgtaaacactt-tgagactgttcgagagagcttacgaaaacaacttataacatgtctatt 7862818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 33941995 - 33941902
Alignment:
Q  166 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||||||||||| ||||||| ||  || |||||||||||||| |||   |||| ||||| | |||| |||| |||||||  ||||||||||||    
T  33941995 ttatgaaaacaacttatgacaagttcataagctgctttcaacttattatcataaactctccaagatagcttatgaaaacaagttataacttata 33941902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 43065428 - 43065513
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaaca 245  Q
    ||||| ||||||||||||| ||||||||||| || |  || ||||| || ||||| |||||||||| | |||| |||| |||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaaca 43065513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 43985350 - 43985237
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    ||||||||| |  ||||||||||||||||  ||| |||| |||| | ||||||| |||   ||||||| ||||||||||| || ||||  ||||||||      
T  43985350 gacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagcttttttcaacttg 43985251  T
Q  211 tttctataagctct 224  Q
    |||| |||||||||    
T  43985250 tttccataagctct 43985237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 1742010 - 1742114
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||| ||||| ||||||| ||||||||||  || ||||   ||||||| ||||| |||| ||||  ||||||  ||| ||||||| |||||| ||||||    
T  1742010 gagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatcttata 1742109  T
Q  260 tataa 264  Q
    |||||    
T  1742110 tataa 1742114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 1939323 - 1939375
Alignment:
Q  173 aacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 225  Q
    |||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 1939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 13867029 - 13866937
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctat 193  Q
    |||||| || ||| ||||||| ||||||||||| |||||  ||| || |||||| | ||||||  ||| ||||||||| ||||||||| ||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacatgcctat 13866937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 17775396 - 17775460
Alignment:
Q  112 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaaca 176  Q
    |||||||||| | ||||||||||||||||  ||  |||||||| | ||||| |||||||||||||    
T  17775396 acttatttgagcatatctactgacataagctcttttaagactgtttgagagggtttatgaaaaca 17775460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 39360158 - 39360023
Alignment:
Q  117 tttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttcta 216  Q
    |||||||||||||||||  |||| ||||||| |||||| | || |||||||||| ||||||| |||||||| || || || |||||||| || ||||| |    
T  39360158 tttgaacttatctactggaataattactcgtgagactgtttgatagagtttatggaaacaacttatgacatatccataagttgctttcagcttatttcaa 39360059  T
Q  217 taagctctctatgatatcttacgaaaacaccttata 252  Q
    ||||||| | | |||| |||  ||||||| ||||||    
T  39360058 taagctcgccaggatagcttttgaaaacatcttata 39360023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 39334328 - 39334193
Alignment:
Q  117 tttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttcta 216  Q
    |||||||||||||||||  |||| ||||||| |||||| | |  |||||||||| ||||||  ||||||||||| || || ||| |||| || ||||| |    
T  39334328 tttgaacttatctactggaataattactcgtgagactgtttggtagagtttatggaaacaatttatgacatgtccataagttgcattcagcttatttcca 39334229  T
Q  217 taagctctctatgatatcttacgaaaacaccttata 252  Q
    ||||||| | | |||| |||  ||||||| ||||||    
T  39334228 taagctcgccaggatagcttttgaaaacagcttata 39334193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 33894766 - 33894660
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 212  Q
    ||||||||| |||||| | ||||||||| ||| || |||||| | | ||||| ||||||||||| ||||||||||||| || || || ||||| || |||    
T  33894766 cttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatt 33894667  T
Q  213 tctataa 219  Q
    || ||||    
T  33894666 tcaataa 33894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 44151405 - 44151471
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaa 177  Q
    ||||||||||||||||| |||||||||||||||| || ||| |  | ||||||| ||||||||||||    
T  44151405 gacttatttgaacttatatactgacataagtacttgtgagattatttgagagagcttatgaaaacaa 44151471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 5628565 - 5628641
Alignment:
Q  180 tatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactta 257  Q
    |||||||||||||| ||||| ||||| || ||||  ||||||||||| |||||||||| ||||||| |||||| ||||    
T  5628565 tatgacatgtctataagctg-tttcagcttattttcataagctctctgtgatatcttatgaaaacagcttatatctta 5628641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 22387814 - 22387939
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctg 199  Q
    ||||||| || |||||| | |||||||| |||||||||||  ||  || |||||| | | ||||| ||||||||||||| |||| ||||| ||| | |||    
T  22387814 ttgtttggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactg 22387913  T
Q  200 ctttcaactaatttctataagctctc 225  Q
     ||| |||| ||||| ||||||||||    
T  22387914 tttttaacttatttccataagctctc 22387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 25014087 - 25014031
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatg 170  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||| | |||||||||||||    
T  25014087 ttatttgaatttatctactgacacaagcacttgtaagactgtttgagagagtttatg 25014031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 12234879 - 12234934
Alignment:
Q  172 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctcta 227  Q
    ||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 3610759 - 3610817
Alignment:
Q  201 tttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||| || |||||||||||||||||| ||||  ||||||||||| |||||| ||||||    
T  3610759 tttcagcttatttctataagctctctaggatagtttacgaaaacaacttatagcttata 3610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 23215006 - 23214920
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 187  Q
    |||||| || ||||||||||| ||||||||||  |||||  |||  | |||||| | |||||| |||||||||||||| ||||||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 28520996 - 28521053
Alignment:
Q  166 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctc 223  Q
    ||||| ||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||||    
T  28520996 ttatggaaacaacttatgacatgtctataagctgttttcagctattttccataagctc 28521053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 36598287 - 36598388
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 212  Q
    |||||||||||||| ||||||||||||| | | || ||| || | ||||||| ||||| ||||| | ||||||||||  || ||||| ||||| || |||    
T  36598287 cttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatt 36598386  T
Q  213 tc 214  Q
    ||    
T  36598387 tc 36598388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 8094445 - 8094369
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgt 189  Q
    ||||||||| ||||||||||  |||||| ||| || |||||  | |||||| |||||||||||| | ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgt 8094369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 19302482 - 19302522
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagt 141  Q
    |||||| || ||||||||||| |||||||||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataagt 19302522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 37611147 - 37611278
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    |||||||||||||||||||| || ||||||| || ||| || | ||||||| ||||||||||||| | ||||||||  || ||||| |||||  | ||||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37611246  T
Q  214 ctataagctctctatgatatcttacgaaaaca 245  Q
    | |||||||||| | |||| |||| |||||||    
T  37611247 ccataagctctccaagatagcttatgaaaaca 37611278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 37787877 - 37788008
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    |||||||||||||||||||| || ||||||| || ||| || | ||||||| ||||||||||||| | ||||||||  || ||||| |||||  | ||||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37787976  T
Q  214 ctataagctctctatgatatcttacgaaaaca 245  Q
    | |||||||||| | |||| |||| |||||||    
T  37787977 ccataagctctccaagatagcttatgaaaaca 37788008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 14295600 - 14295498
Alignment:
Q  158 gagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactta 257  Q
    ||||||| ||||||||||| | ||||| ||||| || ||||| ||||| || | ||||| |||||||| | |||| |||||||||||| |||||| ||||    
T  14295600 gagagagcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagctta 14295501  T
Q  258 tat 260  Q
    |||    
T  14295500 tat 14295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 8090077 - 8090004
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatga 184  Q
    |||||||||||||||||||||| ||| ||| |||||  |||||  | ||||||| ||||||||||||| |||||    
T  8090077 gacttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttatgaaaacaacttatga 8090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 17369354 - 17369316
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataa 139  Q
    |||||| || |||||||||||||||||||||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataa 17369316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 31208623 - 31208541
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatg 183  Q
    |||||| || |||||||||||||| | ||||||||||||| || ||| |||||| | | ||||||| || |||||||| ||||    
T  31208623 tgtttggattgacttatttgaactgaactactgacataagcacccgtgagactgtttgggagagttcataaaaacaacttatg 31208541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 37112197 - 37112281
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgaca 186  Q
    |||||| || ||||||||||| ||| || |||||||||| || |||| |||||| | | |||| |||||||||||||| |||||||    
T  37112197 tgtttgaatcgacttatttgagcttttccactgacataa-tattcgtgagactgttagggagaatttatgaaaacaacctatgaca 37112281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 2460081 - 2460207
Alignment:
Q  112 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaat 211  Q
    |||||||||| |||||  |||  |||||||||| || |||||| | ||||||| ||||| ||||||| |||||||||||| | || || |||||||| ||    
T  2460081 acttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttat 2460180  T
Q  212 ttctataagctctctatgatatcttac 238  Q
    ||| |||||||||| || ||| |||||    
T  2460181 ttccataagctctccataatagcttac 2460207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 281767 - 281926
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || |||||| ||||  |||| || ||||||||||||| || |||||| | | ||||| | ||| || |||| |||||||||||||| || ||     
T  281767 tgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgt 281866  T
Q  201 tttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    ||||| || ||||| || ||||||||| |||| |||| ||| ||| |||||| |||||||    
T  281867 tttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatat 281926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 5329066 - 5328972
Alignment:
Q  159 agagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataa 253  Q
    |||||||||||| ||| ||| ||||  ||||| || ||||||||||| || ||||  |||| ||||| |||||| |||||||||||| |||||||    
T  5329066 agagagtttatggaaataacttatgttatgtccataagctgctttcatcttattttcataaactctccatgataacttacgaaaacagcttataa 5328972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 260
Target Start/End: Complemental strand, 32171605 - 32171459
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    |||||||||||||| |||||||||||| | | || |||||||| | ||||| ||| | ||||||| ||||| |  || || | ||| ||||| || ||||    
T  32171605 ttatttgaacttatttactgacataagcatttgtgagactggttgggagagcttaaggaaacaacttatgatacctccatgaactgttttcagcttattt 32171506  T
Q  214 ctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    | |||||||||| | |||| ||||| ||||||  ||||| |||||||    
T  32171505 ccataagctctccaggataccttactaaaacagattatagcttatat 32171459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 1403088 - 1402988
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||||||||  ||||||| |||||||| ||||| | ||   |||| |||||||||||||| |||| |||||| |||| |||||||  ||||| ||||||    
T  1403088 gagagtttatcgaaacaacttatgacatatctataaactatattcagctaatttctataagatctccatgatagcttatgaaaacaatttatagcttata 1402989  T
Q  260 t 260  Q
    |    
T  1402988 t 1402988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 1669776 - 1669848
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgata 232  Q
    ||||| ||||||||||||| |||||||||||||| ||||| ||||| || ||||| | |||| ||||| ||||    
T  1669776 gagagcttatgaaaacaacttatgacatgtctataagctgttttcagctcatttcgacaagccctctaggata 1669848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 25100115 - 25100039
Alignment:
Q  180 tatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactt 256  Q
    ||||||||||  ||| |||  |||||||| ||||||||||||||| || |||| |||| ||||||| ||||||||||    
T  25100115 tatgacatgttcatttgctattttcaacttatttctataagctctttaagatagcttatgaaaacaacttataactt 25100039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 8420129 - 8420276
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    |||||||| |||||||| ||||||||  ||| || |||||| | | ||||| ||||  ||| | | ||||||||||| |  ||||  |||||||| ||||    
T  8420129 ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttattt 8420228  T
Q  214 ctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    | |||||||||| || ||| ||||||| |||| ||||||  |||||||    
T  8420229 ccataagctctccattatagcttacgagaacagcttatattttatata 8420276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 13908392 - 13908353
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataa 139  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  13908392 ttgtttgaattgacttatttgaacttatctactgacataa 13908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 12757596 - 12757546
Alignment:
Q  210 atttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||| ||| |||||||||||||| |||||||||||| || |||||||||||    
T  12757596 atttttattagctctctatgataacttacgaaaacaactcataacttatat 12757546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 30523745 - 30523652
Alignment:
Q  166 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    ||||| ||||||| |||| |||||  || ||||| ||||||||||||||||||| ||||| | |||| |||| ||||| | |||||| |||||||    
T  30523745 ttatggaaacaacttatgccatgttcataagctgttttcaactaatttctataacctctcaaggatagcttatgaaaa-aacttatagcttatat 30523652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 9667975 - 9668028
Alignment:
Q  172 aaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 225  Q
    ||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 9668028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 14656282 - 14656323
Alignment:
Q  219 agctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||||||||||||| |||||||||||| || |||||||||||    
T  14656282 agctctctatgataacttacgaaaacaactcataacttatat 14656323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 30524023 - 30523930
Alignment:
Q  166 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||||||||||  ||||||||||| ||||| |||||| | || ||||| ||||||||| || |||| |||| ||| | ||| |||| ||||||    
T  30524023 ttatgaaaacaaattatgacatgtccattagttgcttttagcttatttccataagctctttaggatagcttatgaatataccatatagcttata 30523930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 2117475 - 2117403
Alignment:
Q  180 tatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttata 252  Q
    |||| ||||||||| ||||| ||| | || ||||| |||||||||||| |||| |||| ||||||| ||||||    
T  2117475 tatggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaacttata 2117403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 35069531 - 35069571
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagt 141  Q
    ||||||||| | ||||||||| |||||||||||||||||||    
T  35069531 tgtttgtattggcttatttgagcttatctactgacataagt 35069571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 15515636 - 15515534
Alignment:
Q  157 cgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactt 256  Q
    |||||||||||||||||||||| ||||||||||| ||  |||  |||||| | ||||| ||||||| || |||||| |||| ||||||| |||||| |||    
T  15515636 cgagagagtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagctt 15515537  T
Q  257 ata 259  Q
    |||    
T  15515536 ata 15515534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 4868551 - 4868430
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctg 199  Q
    ||||||| || || ||||||||| ||||||| ||||||| | ||| || |||||| | ||||||||||||| ||||||| ||||||||||| || || ||    
T  4868551 ttgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttg 4868453  T
Q  200 ctttcaactaatttctataagct 222  Q
     |||||||| ||||  |||||||    
T  4868452 ttttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 32515374 - 32515496
Alignment:
Q  115 tatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttc 214  Q
    |||||||  ||||||||| ||||||| ||| || |||||| | | ||||| ||||| ||||| | ||||||||||| || || || |||||||| || ||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatc 32515473  T
Q  215 tataagctctctatgatatctta 237  Q
    ||||||||||| |||||| ||||    
T  32515474 tataagctctccatgatagctta 32515496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 15581393 - 15581245
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 212  Q
    ||||||| | |||||||||||||||||| ||| || ||| || | |  |||| | ||| ||||||| |||||||||||||| ||||| ||||| |  |||    
T  15581393 cttattttagcttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttcagcctatt 15581294  T
Q  213 tctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    ||||||||| |||||  ||| ||||  |||| | |||||| ||||||||    
T  15581293 tctataagccctctagcataccttataaaaaaagcttatagcttatata 15581245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 27807256 - 27807194
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaa 173  Q
    ||||||||||||||| |||||||||||||| | | ||||||||| | ||||||| ||||||||    
T  27807256 gacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttatgaaa 27807194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 39270403 - 39270503
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttata 259  Q
    ||||| ||||||||||| | | || |||||| || ||||| |||||||| ||||  ||| |||||||||| || |||| ||||||| |||||| ||||||    
T  39270403 gagagcttatgaaaacagcttttggcatgtccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaacagcttatatcttata 39270502  T
Q  260 t 260  Q
    |    
T  39270503 t 39270503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 15558268 - 15558213
Alignment:
Q  201 tttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactt 256  Q
    ||||| || ||||||||||| |||||| ||||||||| ||||||| ||||||||||    
T  15558268 tttcagcttatttctataagttctctaggatatcttatgaaaacagcttataactt 15558213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 33976737 - 33976678
Alignment:
Q  201 tttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||||||| ||||| |||||||||||| ||||  ||| ||||||| ||||||||||||||    
T  33976737 tttcaacttatttccataagctctctaggataggttaagaaaacaacttataacttatat 33976678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 46504147 - 46504297
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    |||||||||||  |||||||| | |||||||| | || |||||| |||  |||| ||||||||||||| | ||| |||||  | || |  ||||| | ||    
T  46504147 gacttatttgagtttatctaccggcataagtatttgtgagactgttcggtagagcttatgaaaacaacctttgatatgtccgtaagttattttcagccaa 46504246  T
Q  211 tttctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    ||||||||| ||||  | |||| ||||  |||||| |||||||||||||||    
T  46504247 tttctataaactcttcaagataacttatcaaaacaacttataacttatata 46504297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 23373232 - 23373321
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 190  Q
    |||||| || ||||||||||||||| |||||||| ||||| ||| || ||| || | | ||||| ||||  ||||||| |||||||||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtc 23373321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 24460320 - 24460373
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactg 154  Q
    |||||| || ||||||||||||||||||||||||||| || ||| || ||||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactg 24460373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 27140619 - 27140478
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    ||||||| ||| |||||||| ||||||||  | | ||||| ||  | ||||||||||| | ||||| | ||||||||||| || || || ||||| || |    
T  27140619 gacttatatgagcttatctattgacataaacaattgtaagtctctttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcagctta 27140520  T
Q  211 tttctataagctctctatgatatcttacgaaaacaccttata 252  Q
    |||  |||||||||| |||||| ||||  |||||| ||||||    
T  27140519 tttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 37811953 - 37811844
Alignment:
Q  151 actggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacacctta 250  Q
    |||||| ||||||  ||||||||||| | ||||||||||  || | ||| |||||||| ||||| || ||||||| |||||  |||| ||||||| ||||    
T  37811953 actggttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggcttatgaaaacagctta 37811854  T
Q  251 taacttatat 260  Q
     || ||||||    
T  37811853 caatttatat 37811844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 4549472 - 4549612
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctat-tagctgctttcaactaat 211  Q
    |||||||||  |||||||||| |||||| | |  | |||||| | | ||||| ||||  ||||||| ||||||||||||||  || || ||||||| |||    
T  4549472 cttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacatgtctataaagttgttttcaacaaat 4549571  T
Q  212 ttctataagctctctatgatatcttacgaaaacaccttata 252  Q
    ||| |||||||||| | |||  |||| ||||||| ||||||    
T  4549572 ttcaataagctctccaggattgcttatgaaaacatcttata 4549612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 6292644 - 6292604
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataag 140  Q
    ||||||| || ||||||||||| ||||||||||||||||||    
T  6292644 ttgtttggattgacttatttgagcttatctactgacataag 6292604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 16980944 - 16980868
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 187  Q
    ||||||||||||||||| |||  ||||||||||| || |||||  | ||||||| ||||| ||||||| || |||||    
T  16980944 gacttatttgaacttatataccaacataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  103 tttgtatggacttatttgaacttatctactgacataa 139  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 36646300 - 36646460
Alignment:
Q  100 ttgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctg 199  Q
    ||||||| || ||||||||| | | |||||| || |||| | ||| ||||||||  | | ||||| ||||| |||| || |||| |||||| || |||||    
T  36646300 ttgtttggatcgacttatttaagcatatctattggcataggcacttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctg 36646399  T
Q  200 ctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
     ||||| || |||||||||| ||||||| |||| |||| |||||||  |||||||||||||    
T  36646400 ttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttatat 36646460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 22667542 - 22667468
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 187  Q
    ||||||||| |||||||||||||||||| ||| || |||||| | ||||||||||||| ||||| ||||| ||||    
T  22667542 cttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataacat 22667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 22724181 - 22724107
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacat 187  Q
    ||||||||| |||||||||||||||||| ||| || |||||| | ||||||||||||| ||||| ||||| ||||    
T  22724181 cttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataacat 22724107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 34610725 - 34610765
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagt 141  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  34610725 tgtttgtatggacttatttgagcttatctactgacataagt 34610765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 37273273 - 37273141
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatt 212  Q
    ||||||||||||||| || |  |||||| ||| || |||||| | | ||||| ||||| ||||||| ||||||||||| || || || |||||||| |||    
T  37273273 cttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatt 37273174  T
Q  213 tctataagctctctatgatatcttacgaaaaca 245  Q
    || ||||| |||| | |||| |||| |||||||    
T  37273173 tccataagttctccaagatagcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 41724350 - 41724202
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaac-taatt 212  Q
    ||||||||||||||||||||||||||||||| || |||| | | | || |  ||||| ||||||| ||||||||||| || || || ||||| | || ||    
T  41724350 ttatttgaacttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T
Q  213 tctataagctctctatgatatcttacgaaaacaccttataacttatata 261  Q
    | ||||||||||| | |||| || | |||||||  ||||| ||||||||    
T  41724250 tatataagctctcaaggatagctgatgaaaacagtttatagcttatata 41724202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 31010540 - 31010409
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    ||||||||||||| ||||| ||||||| ||| || ||  || | | || || ||||  ||||||| ||||||||||| || ||||| ||||| || | ||    
T  31010540 ttatttgaacttaactactaacataagaacttgtgagtgtgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttcagcttaatt 31010441  T
Q  214 ctataagctctctatgatatcttacgaaaaca 245  Q
    | |||||||||||||||||  |||||||||||    
T  31010440 ccataagctctctatgataggttacgaaaaca 31010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 31710819 - 31710958
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    |||||||||||||||||| |||||||| ||| || || ||| | | || || |||| |||||||| ||||||||| | || ||||| ||||| || | ||    
T  31710819 ttatttgaacttatctaccgacataagaacttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaatt 31710918  T
Q  214 ctataagctctctatgatatcttacgaaaacaccttataa 253  Q
    | | |||||||||| ||||  ||| ||||||| |||||||    
T  31710919 ccaaaagctctctaagataggttaagaaaacagcttataa 31710958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 31711074 - 31711213
Alignment:
Q  114 ttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaattt 213  Q
    |||||||||||||||||| |||||||| ||| || || ||| | | || || |||| |||||||| ||||||||| | || ||||| ||||| || | ||    
T  31711074 ttatttgaacttatctaccgacataagaacttgtgagtctgtttgtgaaagcttataaaaacaacttatgacatgcccatgagctgttttcagcttaatt 31711173  T
Q  214 ctataagctctctatgatatcttacgaaaacaccttataa 253  Q
    | | |||||||||| ||||  ||| ||||||| |||||||    
T  31711174 ccaaaagctctctaagataggttaagaaaacagcttataa 31711213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 54775219 - 54775126
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataa 253  Q
    ||||||||||| ||| ||| ||||  ||||| || ||||||||||| || ||||  |||| ||||| |||||| |||||||||||| |||||||    
T  54775219 gagagtttatggaaataacttatgttatgtccataagctgctttcatcttattttcataaactctccatgataacttacgaaaacagcttataa 54775126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 2175804 - 2175892
Alignment:
Q  137 taagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 225  Q
    |||| ||| ||||||||  | |||| |||||||||||||||| |||||||||| | | ||||| ||||||||  ||||||||| |||||    
T  2175804 taagcacttgtaagactatttgagatagtttatgaaaacaacttatgacatgtttgtaagctgttttcaacttgtttctataaactctc 2175892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 30923883 - 30923963
Alignment:
Q  167 tatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacacc 247  Q
    |||| ||||| | |||||||||||||| ||||| ||||| || |||||||||| ||||||| ||||  ||| |||||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaacacc 30923963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 43115147 - 43115047
Alignment:
Q  161 agagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||||||||| ||||||| ||||||||||| || |  || ||||| || ||||| |||||||||| ||||||  | | ||||||| |||||| |||||||    
T  43115147 agagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatagttcatgaaaacaacttatagcttatat 43115048  T
Q  261 a 261  Q
    |    
T  43115047 a 43115047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 14548688 - 14548799
Alignment:
Q  149 agactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacacct 248  Q
    |||||| | ||||||| ||||||||||||| |||||||| |  ||  |||| ||||| || ||||| |||||||||| |  ||| |||| ||||||| ||    
T  14548688 agactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctccagaataacttatgaaaacaact 14548787  T
Q  249 tataacttatat 260  Q
    |||| |||||||    
T  14548788 tatagcttatat 14548799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 48286794 - 48286888
Alignment:
Q  166 ttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    ||||||||||||| || |||||||| || | | | | ||| || |||||||||||||||  |||||| |||| |||||||  |||||||||||||    
T  48286794 ttatgaaaacaacctacgacatgtccataaaccgttatcagcttatttctataagctctacatgataacttatgaaaacagtttataacttatat 48286888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 50211875 - 50211809
Alignment:
Q  112 acttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaac 178  Q
    |||||||| | |||||||||| ||||||| ||| ||||||||| | ||||||  |||||||||||||    
T  50211875 acttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaac 50211809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 21574582 - 21574517
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 225  Q
    ||||| ||||||||||||| ||||||||||  || ||||||||| | || ||||| ||||||||||    
T  21574582 gagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctc 21574517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 24624349 - 24624272
Alignment:
Q  113 cttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtc 190  Q
    |||| ||||||||||||||| |||| || ||| ||||||||| | |  |||| ||||||||||| | |||||||||||    
T  24624349 cttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtc 24624272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 51130842 - 51130749
Alignment:
Q  160 gagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataa 253  Q
    ||||| |||||||||| |  ||||||||||| || || |||||||| || ||||  |  ||||||| |||||| |||| |||||||||||||||    
T  51130842 gagagcttatgaaaaccatgtatgacatgtccataagttgctttcagcttattttcaatagctctccatgatagcttatgaaaacaccttataa 51130749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 2152161 - 2152221
Alignment:
Q  165 tttatgaaaacaacatatgacatgtctattagctgctttcaactaatttctataagctctc 225  Q
    |||||||||||||| ||||||||||   | ||||| ||||||||  |||||||||||||||    
T  2152161 tttatgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctctc 2152221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 16790205 - 16790241
Alignment:
Q  250 ataacttatatataagaacttatatgataagcgctta 286  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  16790205 ataacttatatataagcacttatatgataaacgctta 16790241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 20192525 - 20192649
Alignment:
Q  101 tgtttgtatggacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgc 200  Q
    |||||| || |||| |||| || ||||||| ||||||||| |||  | | ||||   ||||||| ||||  ||||| | ||||||||||| || |||||     
T  20192525 tgtttggattgactaatttcaatttatctattgacataagcacttcttacactgtatgagagagcttatagaaacagcttatgacatgtccataagctgt 20192624  T
Q  201 tttcaactaatttctataagctctc 225  Q
    |||||||| ||||| ||||||||||    
T  20192625 tttcaactcatttccataagctctc 20192649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 26542677 - 26542546
Alignment:
Q  111 gacttatttgaacttatctactgacataagtactcgtaagactggtcgagagagtttatgaaaacaacatatgacatgtctattagctgctttcaactaa 210  Q
    |||||||||||  ||||||||| ||||||||||| ||||||||| | |  |||| |||   ||||||| ||||| |||||||| |  || |||||||| |    
T  26542677 gacttatttgat-ttatctactcacataagtacttgtaagactgtttggaagagcttactgaaacaacttatgatatgtctataacttgttttcaactta 26542579  T
Q  211 tttctataagctctctatgatatcttacgaaaa 243  Q
    |||| |||| ||||| || ||| |||| |||||    
T  26542578 tttccataaactctccataatagcttatgaaaa 26542546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 40665500 - 40665424
Alignment:
Q  181 atgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataactta 257  Q
    |||||||||  || ||||| ||||| || |||| ||||||||||| | |||| |||| ||||||| |||||||||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataagctctccaagataacttatgaaaacatcttataactta 40665424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 159971 - 160051
Alignment:
Q  180 tatgacatgtctattagctgctttcaactaatttctataagctctctatgatatcttacgaaaacaccttataacttatat 260  Q
    |||||||||||||| ||| | ||||| || ||||| | ||||||| || |||| |||| ||||||| ||||||||||||||    
T  159971 tatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttataacttatat 160051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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