View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_high_74 (Length: 306)
Name: NF16533_high_74
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 22913561 - 22913263
Alignment:
| Q |
1 |
aattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913561 |
aattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaaca |
22913462 |
T |
|
| Q |
101 |
ggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaagttacctactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913461 |
ggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaagttacctactt |
22913362 |
T |
|
| Q |
201 |
tagaagaaaaacatgattctaaggtaattttgaaaattgggttgcctttgatttcactatgtttgattctaatggtagctatagcaatatttcatttca |
299 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913361 |
tagatgaaaaacatgattctaaggcaattatgattattggtttgcctttgatttcactatgtttgattctaatggtagctatagcaatatttcatttca |
22913263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22893840 - 22893646
Alignment:
| Q |
1 |
aattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||| | || |
|
|
| T |
22893840 |
aattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctccaattcttaacaatagtatgtatgttggattttcatcagctact |
22893741 |
T |
|
| Q |
101 |
ggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaagttacc |
195 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
22893740 |
ggttcatttctaacttctcattatattcttggttggagttttaagattaatggtcaagctcaaaaccttgtaatctctgaacttcctgagttacc |
22893646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 22809526 - 22809342
Alignment:
| Q |
3 |
ttaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacagg |
102 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22809526 |
ttaatgttgttaaaccaacacgacctttgttatcattcaccaaagatctttctccaattcttaacactagtatgtatgttggattctcatcttcaacagg |
22809427 |
T |
|
| Q |
103 |
ttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
22809426 |
ttctattctatcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgatatctctaaacttcct |
22809342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 22875797 - 22875621
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
22875797 |
taaaccaacacaacctttgttatcattgaccaaagatctttctccaattctcaacaatagaatgtatgttggattctcatcttcaacaggtttaatttta |
22875698 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
22875697 |
gcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctctgaacttcctaa |
22875621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 22889167 - 22888991
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
22889167 |
taaaccaacacaacctttgttatcattgaccaaagatctttcttcaattctcaacaatagaatgtatgttggattctcatcttcaacagggttaatggta |
22889068 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaa |
189 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
22889067 |
gcttctcagtatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctaa |
22888991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22898159 - 22897965
Alignment:
| Q |
1 |
aattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||||| | |||| |||||||||||||||||| ||||| | || |
|
|
| T |
22898159 |
aattaatgttgttaaaccaaaacaacctttgttgtcattgaccagagatctttctccaattttaaacaatagtatgtatgttggattttcatcagctact |
22898060 |
T |
|
| Q |
101 |
ggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaagttacc |
195 |
Q |
| |
|
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
22898059 |
ggttcagttttcacttctcattatattcttggttggagttttaaggttaatggtcaagctgaaaaccttgtaatctctgaacttcctaagctacc |
22897965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 22814902 - 22814725
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| | | || || |
|
|
| T |
22814902 |
taaaccaacacaacctttgttatcattgaccaaagatctttcttcaattctcaacaatagaatgtatgttggattctcatcttcaacagggttacttgta |
22814803 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaag |
190 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
22814802 |
gcttctcattatattcttgggtggagttttaaggttaatggccaagctcaaaaccttgaaatatctgaacttcctaag |
22814725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 22826145 - 22825957
Alignment:
| Q |
1 |
aattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||||| || ||||| | |||| |||||||||||||||||||||||| | || |
|
|
| T |
22826145 |
aattaatgttgttaaaccaaaacaacctttgttttcattgaccagagatcttcctccaattttgaacaatagtatgtatgttggattctcatcagctact |
22826046 |
T |
|
| Q |
101 |
ggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcctaa |
189 |
Q |
| |
|
|||||| || | ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22826045 |
ggttcagttttcacttctcattatattcttggttgaagttttaagcttaatggtcaagctcaaaatcttgtaatttctgaacttcctaa |
22825957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 22885500 - 22885326
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| |||| || |||| ||| ||||||||||||||||||||||||||||| | |||| || |
|
|
| T |
22885500 |
taaaccaacacaacctttgttatcattgaccaaagatctttctccaatactcaacaatagaatgtatgttggattctcatcttcaacagggttaattgta |
22885401 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||| |
|
|
| T |
22885400 |
gcttctcattatattcttggttggagttttaaggttaatagccaagctcaaaaccttgaaatctctgaacttcct |
22885326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 22805200 - 22805019
Alignment:
| Q |
6 |
atgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttc |
105 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
22805200 |
atgttgttaaaccaacaggaccttcgttatcaatgaccaaagatctttctccaattcttaacaatagtatgtatgttggattctcatcttcaacagggtt |
22805101 |
T |
|
| Q |
106 |
aattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
22805100 |
acttgcagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgtaatctctcaatttcct |
22805019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 22880466 - 22880294
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| || || |||||| ||||||| ||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||| | | |||| || |
|
|
| T |
22880466 |
taaaccaacacgacatttgttgtcattgaccaaagatctttctccaattctcaacaatagtatgtatgttggattatcatcttcaacaaggttaatttta |
22880367 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttc |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
22880366 |
gcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgagcttc |
22880294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 22858343 - 22858160
Alignment:
| Q |
4 |
taatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggt |
103 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| | |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||| || |
|
|
| T |
22858343 |
taatgttgttaaaccagcacgacctttgttatcattcacgaaagatctttctccaattctcaacaatagaatgtatgttggattctcatcttcaaccggg |
22858244 |
T |
|
| Q |
104 |
tcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||| |
|
|
| T |
22858243 |
gtaattgtagcttcccattatattcttggttggagttttaaggttaatggccaagctcaaaaccttgaaatctctaaacttcct |
22858160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 22830906 - 22830732
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
22830906 |
taaaccaacacaaccgacgttatcattgaccaaagatctttccccaattctcaacaatagaatgtatgttggattctcatcttcaacagggttcattgca |
22830807 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||| ||||||| |||| ||||||||| |||||| |
|
|
| T |
22830806 |
gcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctctgaccttcct |
22830732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 22839927 - 22839753
Alignment:
| Q |
13 |
taaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattcta |
112 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
22839927 |
taaaccaacacaaccgacgttatcattgaccaaagatctttccccaattctcaacaatagaatgtatgttggattctcatcttcaacagggttcattgca |
22839828 |
T |
|
| Q |
113 |
acttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||| ||||||| |||| ||||||||| |||||| |
|
|
| T |
22839827 |
gcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctctgaccttcct |
22839753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 21150851 - 21151013
Alignment:
| Q |
25 |
acctttgttatcattgaacaaagatctttcttcaattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattat |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||||| | | || | ||||||||||| |
|
|
| T |
21150851 |
acctttgttatcattgaccaaagatctttctccagttctcaacaatagtatgtatgttggattctcatcttcaacagggttacttgcagcttctcattat |
21150950 |
T |
|
| Q |
125 |
attcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctctgaacttcct |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||| |
|
|
| T |
21150951 |
attcttggttggagttttaaggttaatggcctggctcaaaaccttgaaatctctgaacttcct |
21151013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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