View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_78 (Length: 301)
Name: NF16533_high_78
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_78 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 4331470 - 4331201
Alignment:
| Q |
20 |
tatatcatctgcaaagttgacaagtaattgcaatttgcttcctgtaacagttttcttcagatcacttattgatactaaaaactggtcaagtaatgacaat |
119 |
Q |
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| T |
4331470 |
tatatcatctgcaaagttgacaagtagttgcaatttgcttcctgcaacagttttcttcacatcacttattgatactaaaaattggtcaagtaatgataat |
4331371 |
T |
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| Q |
120 |
gtct---tcatgtcatcaggaggaaaataggtggctgtttttcctttgattcatgaaaacaggagagaaagtgaaggccaagtatcgtaccggtcgtcca |
216 |
Q |
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| T |
4331370 |
gtctaactcatgtcatcaggaggaaaatagctggctgtttttcctttgattcatgaaaacaggagagaaagtgaaggccaagtatcgtaccggtagtcca |
4331271 |
T |
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| Q |
217 |
taaattcgtctagataaacagtttaatcacgcgcttataacataattgtttatcatataggtgctttcat |
286 |
Q |
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| T |
4331270 |
taaactcgtctagataaacagtttaatcacgcgcttataacataattgtttatcatataagtgctttcat |
4331201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 226
Target Start/End: Complemental strand, 4325861 - 4325692
Alignment:
| Q |
57 |
cttcctgtaacagttttcttcagatcacttattgatactaaaaactggtcaagtaatgacaatgtcttcatgtcatcaggaggaaaataggtggctgttt |
156 |
Q |
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| T |
4325861 |
cttcctgcaacagttttcttcacagctccaactgagaccaaaaactcgtcaagagatgataaggttctcatgtcatcgggaggaaagtaactggctgctt |
4325762 |
T |
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| Q |
157 |
ttcctttgattcatgaaaacaggagagaaagtgaaggccaagtatcgtaccggtcgtccataaattcgtc |
226 |
Q |
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| T |
4325761 |
ttcctttgatcgatgaaaacagaagggaaagtgaaggccaagcatcataccggtcatccaaaaactcgtc |
4325692 |
T |
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