View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_80 (Length: 295)
Name: NF16533_high_80
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_80 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 6250987 - 6251172
Alignment:
| Q |
22 |
tgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatt---tacgaccattttctact---tctgtaacgtgtttcc |
115 |
Q |
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| T |
6250987 |
tgtgcttcaattctagaagctcctccactatacttctcattacaataattgcatatccaataattatgaccattttctactccttctgtaacgtgtttcc |
6251086 |
T |
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| Q |
116 |
gacagtcctcgnnnnnnnnnctacccattatcaatttctttcctaaacacaggtccaaggttgaattaaaataacagaataagcat |
201 |
Q |
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| T |
6251087 |
ggcagtcctcgttttttttcctacccattatcaatttctttcctaaacacagatccaaggttgaattcaaaaaacagaataagcat |
6251172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 6111325 - 6111482
Alignment:
| Q |
17 |
caaggtgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatttacgaccattttctacttctgtaacgtgtttccg |
116 |
Q |
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| T |
6111325 |
caaggtgtgtttgaattctagaagctcctccactaaacttatcattacaataattgcatatccatttaagaccattttctactcttgtaacatgtttcca |
6111424 |
T |
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| Q |
117 |
acagtcctcgnnnnnnnnnctacccattatcaatttctttcctaaacacaggtccaag |
174 |
Q |
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| T |
6111425 |
gcagtgctcgtgttttcctctacccattatcaatatctttcctaaacacagatccaag |
6111482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 6209911 - 6210004
Alignment:
| Q |
22 |
tgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatttacgaccattttctacttctgtaacgtgtttcc |
115 |
Q |
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| T |
6209911 |
tgtgcttcaattcttgaagctcctccactaaacttatcattacaatatttgcatatccatttacgaccattttctacttctgtaacgtgtttcc |
6210004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 6251307 - 6251367
Alignment:
| Q |
224 |
ttcttttcatggaaaaaataggatctagttgaaaatttgtacacgattaattggttttcat |
284 |
Q |
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| T |
6251307 |
ttcttttcatggaaaaaataggatctagttgaaaatttgtacacgattaattggttttcat |
6251367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 6183762 - 6183841
Alignment:
| Q |
203 |
caaagaaagatcaagtttattttcttttcatggaaaaaa-taggatctagttgaaaatttgtacacgattaattggtttt |
281 |
Q |
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| T |
6183762 |
caaagaaatatctagtttattttcttttcatggaaaaaaatagaatctagttgaaaatttgtgcacgattaatcggtttt |
6183841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 6183438 - 6183574
Alignment:
| Q |
22 |
tgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatttacgaccattttctacttctgtaacgtgtttccgacagt |
121 |
Q |
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| T |
6183438 |
tgtgcttcaattctagaagctcctccactatactcaatactacaataattgcatatccatgtattcttattttctacttctgtaacgtgtttccggcagt |
6183537 |
T |
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| Q |
122 |
cctcgnnnnnnnnnctacccattatcaatttctttcc |
158 |
Q |
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| T |
6183538 |
cctcgtttttttttctacccattatcaatatctttcc |
6183574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 6090364 - 6090452
Alignment:
| Q |
19 |
aggtgtgcttgaattcttgaagctcctccactgaacggaatattacaatgattgcatatccatttacgaccattttctacttctgtaac |
107 |
Q |
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| T |
6090364 |
aggtctgcttcaattctcgaagcatctccattgaacttaagattacaatgcttgcatatccattcacgaccgttttctacttttgtaac |
6090452 |
T |
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