View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_high_89 (Length: 265)
Name: NF16533_high_89
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_89 |
 | |
|
| [»] scaffold0770 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0736 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 50565917 - 50566048
Alignment:
| Q |
10 |
gagatgaagaaaaaggcacaataagatgacataattttttaagaattcttcttctacaatactcttacataccctctcaaattgaaatttcatatactca |
109 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50565917 |
gagaagaaaaaaaaggcacaataagataacataattttttaagaattcttcttctacaatactcttacataccctctcaaattgaaatttcatatactca |
50566016 |
T |
|
| Q |
110 |
tgtactaaagagttgttcaaaagacatattta |
141 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
50566017 |
tgtactaaagagttgttcataagacatattta |
50566048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 50566104 - 50566214
Alignment:
| Q |
137 |
atttaaaaggttgaactcaaaataaacccacaataaaacattaaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtcta |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50566104 |
atttaaaaggttgaactcaaaataaacccacaataaaacattaaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtcta |
50566203 |
T |
|
| Q |
237 |
gaagaagaatg |
247 |
Q |
| |
|
||||||||||| |
|
|
| T |
50566204 |
gaagaagaatg |
50566214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 50513907 - 50514017
Alignment:
| Q |
137 |
atttaaaaggttgaactcaaaataaacccacaataaaacattaaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtcta |
236 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50513907 |
atttaaaaggttgaactcaaaataaatccacaataaaacattaaagagggtgcatcctttcacctttctttacattaaaagttgggcacatttaagtcta |
50514006 |
T |
|
| Q |
237 |
gaagaagaatg |
247 |
Q |
| |
|
||||||||||| |
|
|
| T |
50514007 |
gaagaagaatg |
50514017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 50513749 - 50513873
Alignment:
| Q |
19 |
aaaaaggcacaataagatgacataattttttaagaattcttcttctacaatactcttacataccctctcaaattgaaatttcatatactc--atgtacta |
116 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50513749 |
aaaaagacacaataagatcacataagtttttaagagttcttcttcaacaatactcttacataccctctcaaattgaaatttcatatactcatatgtacta |
50513848 |
T |
|
| Q |
117 |
aagagttgttcaaaagacatattta |
141 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
50513849 |
aagagttgttcataagacatattta |
50513873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 45497223 - 45497150
Alignment:
| Q |
137 |
atttaaaaggttgaactcaaaataaacccacaataaaacattaaagagggtgcatcctttcacctttctttaca |
210 |
Q |
| |
|
|||||||||| | |||||||||||||| || || |||||| |||| | |||| |||||||||||||| |||||| |
|
|
| T |
45497223 |
atttaaaaggataaactcaaaataaacacataacaaaacactaaaaatggtgtatcctttcacctttatttaca |
45497150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 45495952 - 45495882
Alignment:
| Q |
138 |
tttaaaaggttgaactcaaaataaacccacaataaaacattaaagagggtgcatcctttcacctttctttaca |
210 |
Q |
| |
|
||||||||| | ||||||||||||| |||| |||||| |||| |||||| |||||||||||||| |||||| |
|
|
| T |
45495952 |
tttaaaaggatagactcaaaataaac--acaacaaaacactaaaaagggtgtatcctttcacctttgtttaca |
45495882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38924507 - 38924568
Alignment:
| Q |
19 |
aaaaaggcacaataagatgacataattttttaagaattcttcttctacaatactcttacata |
80 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
38924507 |
aaaaagacacaataagatcacataagtttttaaaaattcttcttatacaatactcttacata |
38924568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 38924584 - 38924629
Alignment:
| Q |
199 |
cctttctttacattaaaagttgggcacatttaagtctagaagaaga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
38924584 |
cctttctttacattaaaagttgggcacattcaaacctagaagaaga |
38924629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 4586 - 4517
Alignment:
| Q |
58 |
ttcttctacaatactcttacataccctctcaaattgaaatttcatatactc---atgtactaaagagttgttcaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
4586 |
ttcttctacaatactcttac-----ctctcaaattgaaatttcatacactcattatgtactaaggagttgttcaa |
4517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 102890 - 102821
Alignment:
| Q |
58 |
ttcttctacaatactcttacataccctctcaaattgaaatttcatatactc---atgtactaaagagttgttcaa |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
102890 |
ttcttctacaatactcttac-----ctctcaaattgaaatttcatacactcattatgtactaaggagttgttcaa |
102821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0736 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0736
Description:
Target: scaffold0736; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 1102 - 1029
Alignment:
| Q |
138 |
tttaaaaggttgaactcaaaataaacccacaataaaacattaaagagggtgcatcc-tttcacctttctttaca |
210 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| |||||| |||| |||||| |||| |||||||||| |||||| |
|
|
| T |
1102 |
tttaaaaggatagactcaaaataaacacacaacaaaacactaaaaagggtgtatccttttcacctttgtttaca |
1029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University