View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_90 (Length: 262)
Name: NF16533_high_90
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_90 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 35211706 - 35211585
Alignment:
| Q |
1 |
ctaaattattcttcatgttcgttcttttgacaagactcttaatggttaataaatggttttcattccctaaaataaaagttttcattagatattcaaaaag |
100 |
Q |
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| T |
35211706 |
ctaaattattcttcatgttcgttcttttgacaagactcttaatggttaataaatggttttcattccctaaaataaaagttttcattagacattcaa---- |
35211611 |
T |
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| Q |
101 |
ataaataaacgttgggtgtgtactagca |
128 |
Q |
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| T |
35211610 |
--aaataaacgttgggtgtgtactagca |
35211585 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 35211478 - 35211425
Alignment:
| Q |
199 |
tcaataacttactatttgttgaattcctaataagatatgtatttaggacctatg |
252 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35211478 |
tcaataccttactatttgttgaattcctaataagatatgtatttaggacctatg |
35211425 |
T |
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