View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_1 (Length: 1176)
Name: NF16533_low_1
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 590
Target Start/End: Complemental strand, 13630508 - 13629929
Alignment:
| Q |
15 |
caaaggtacaccagtgcgttttaaaagaatagctcatttgtttgcgatgacatcaatgttaataactcaatgactggttcttataaaacaggtttccttc |
114 |
Q |
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| T |
13630508 |
caaaggtacaccagtgcgttttaaaagaatagctcatttgtttgagatgacatcaatgttaataactcaatgattggttcttataaaacaggtttccttc |
13630409 |
T |
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| Q |
115 |
aacaacaaaaaatgctataataaaagaagtgtttagcgttttggtcaaaaaagaa----agaagtgtttagcgtaaaactgaatagattagtagg---gt |
207 |
Q |
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| T |
13630408 |
aacaacaaaaaatgcaataataaaagaagtgtttagcgttttggtcaaaaaagaaagaaagaagtgtttagcgtaaaactgaatagattagtaggtgtgt |
13630309 |
T |
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| Q |
208 |
attgccaaactgtcagtgagcaaatagtgcaactcttaataattgagactatgcattgccatattgacataatttgtcgaaatctaacaagggaatcaac |
307 |
Q |
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| T |
13630308 |
attgccaaattgtcagtgagcaaatagtgcaactcttaataattgagactatgtattgccatattgacataatttgtcgaaatctaacaagtgaatcaac |
13630209 |
T |
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| Q |
308 |
atagtaaaacttgcttgccaattgtgggaat--gaatcctctcaatttttct-tctcttatgtctctcaattgtttataaatcttaccattgaaaagnnn |
404 |
Q |
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| T |
13630208 |
atagtaaaacttgcttgccaattgtgggaatgagaatcctctcaatttttctctctcttatgtctctcaattgtttataaatctt-ttattaata----- |
13630115 |
T |
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| Q |
405 |
nnnnnntgtgagatgagttattaatataaacactgggtacaaaactttaatggagtgcttggtagcaccatccctttgcatgtttctggaaactggaact |
504 |
Q |
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| T |
13630114 |
taaaaatgtgagatgagttattaatataaaaactgggcacaaaactttaatggatagcttggtagcaccatccctttgcatgtttctggaaactggaact |
13630015 |
T |
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| Q |
505 |
tggattgaacatccctgccgaagttaagaacatcataaggtgcctttgccgaaattgtaagcaagattatcttagaacttagagtt |
590 |
Q |
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| T |
13630014 |
tggattgaacatccctgccgaagttaagaacgtcataaggtgcctttgccgaaattgtaagcaagattatcttagaacttagagtt |
13629929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 915 - 1160
Target Start/End: Complemental strand, 13629457 - 13629221
Alignment:
| Q |
915 |
gtttaacagtgtggtaactaataagtatccgaaatatgttggtttagtaaccaaggtataggcttctgctatatagttcagtatgagaaagcatacatct |
1014 |
Q |
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| T |
13629457 |
gtttaatagtgtggtaactaataagtatctgaaatatgttggtttaataaccaaggtataggcttctgctatatagttcagtatgagaaagcatacatct |
13629358 |
T |
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| Q |
1015 |
tgaatggaatgaataatagacgcaactatttattgtgttaaggggaatataattttgactcagatgttctggctttatgtattagtctttaggcagcctt |
1114 |
Q |
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| T |
13629357 |
tgaat---------aatagacgcaactatttattgtgttgaggggaatataattttgactcagatgttctggctttatgtattagtctttaggcaacctt |
13629267 |
T |
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| Q |
1115 |
gtcactgaccttaagttgtacattaatgttgttttgcagtgatatt |
1160 |
Q |
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| T |
13629266 |
gtcactgaccttaagttgtacattaatgttgttttgcagtgatatt |
13629221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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