View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_108 (Length: 261)
Name: NF16533_low_108
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_108 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 5079320 - 5079580
Alignment:
| Q |
1 |
gagaataacagttccatgcaatatgggattgaaaaatattttgtattacatatagattcaaaaattattgggaatatacagaaacaaagagagtcttcaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5079320 |
gagaataacagttccatacaatatgggattgaaaaatattttgtattacatatagattcaaaaattattgggaatatacagaaacaaagagagtcttcaa |
5079419 |
T |
|
| Q |
101 |
agtataaggtaatgtgagatttataaatcactatatacttttatttcttgannnnnnnnnccctcattgagtgaataaggtcttgatttttactaatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5079420 |
agtataaggtaatgtgagatttataaatcactatatacttttatttctagatttttttttccctcattgagtgaataaggtcttgatttttactaatgat |
5079519 |
T |
|
| Q |
201 |
gcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgcta |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5079520 |
gcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgcta |
5079580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 5102750 - 5102692
Alignment:
| Q |
203 |
agttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgcta |
261 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
5102750 |
agttacatctgtcatattaatccgagcctcaggtgaatcttcacaacatctcaatgcta |
5102692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 16887063 - 16886974
Alignment:
| Q |
172 |
tgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgcta |
261 |
Q |
| |
|
|||||||| |||||||||| | || ||||||||||||||||| |||| ||| ||||| || ||| ||||| ||||||| |||||||||| |
|
|
| T |
16887063 |
tgaataagatcttgattttgattagtgatgcagttacatctgccatactaatccttgcttctggtgaatctgcacaacatctcaatgcta |
16886974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University