View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_109 (Length: 260)
Name: NF16533_low_109
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 39488845 - 39489006
Alignment:
| Q |
1 |
aatgtagtcaactgtattatgggaaagctgaactgtgttgaaattgattttattattgttgactgtttagacattttggttagttaattaaatgtaagtg |
100 |
Q |
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||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
39488845 |
aatgtagtcaattgtattatggggaagatgaactgtgttgaaattgatttcattattgttgactgtttagacattttggttagtttattaaatataagtg |
39488944 |
T |
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| Q |
101 |
ttgttgctgttaaaagatgtaagaacaaagctgcccatgctcttgtaggtgtagctagaagt |
162 |
Q |
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| T |
39488945 |
ttgttgctgttaaaagatgtaagaacaaagctgcccatgctcttgtaggtgtagctagaagt |
39489006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 39494178 - 39494270
Alignment:
| Q |
152 |
tagctagaagtgtaggtactaaggaatggattgggaatgtccctgatcctgtctcatctattgtaatttctgaacttcttgattgcaatgaat |
244 |
Q |
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| T |
39494178 |
tagctagaagtgtaggtactaaggaatggattgggaatgtccctgatcctgtctcatctattgtagtttctaaacttcttgattgcaatgaat |
39494270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 46035072 - 46035186
Alignment:
| Q |
130 |
gctgcccatgctcttgtaggtgtagctagaagtgtaggtactaaggaatggattgggaatgtccctgatcctgtctcatctattgtaatttctgaacttc |
229 |
Q |
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| T |
46035072 |
gctgcccatgctcttgtaggtgtagctagaagtgtaggtactaaggaatggattgggaatgtccctgatcctgtctcatctattgtaatttctgaacttc |
46035171 |
T |
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| Q |
230 |
ttgattgcaatgaat |
244 |
Q |
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| T |
46035172 |
ttgattgcaatgaat |
46035186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 46034967 - 46035075
Alignment:
| Q |
1 |
aatgtagtcaactgtattatgggaaagctgaactgtgttgaaattgattttattattgttgactgtttagacattttggttagttaattaaatgtaagtg |
100 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
46034967 |
aatgtagtcaactgtattatggggaagatgaactgtgttgaaattgattttattattgttgactgtttagacattttagttagtttattaaatgtaagtg |
46035066 |
T |
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| Q |
101 |
ttgttgctg |
109 |
Q |
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||||||||| |
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| T |
46035067 |
ttgttgctg |
46035075 |
T |
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