View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_11 (Length: 615)
Name: NF16533_low_11
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_11 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 599
Target Start/End: Complemental strand, 27093 - 26496
Alignment:
| Q |
14 |
cacagacaacatcaacaacatgcttaccttaatcctttcaaaagaggagattagaaatgcagtgttctctctaaacaaggatgggtcccctggacctgat |
113 |
Q |
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| T |
27093 |
cacagacaacatcaacaacatgcttaccttaatcccttcaaaagaggagattagaaatgcagttttctctctaaacaaggatggggcccctggacctgat |
26994 |
T |
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| Q |
114 |
gggtttggtgcagnnnnnnnc-aaacttactagcatgtaatcaatagagatgtggagaatgctgtcttggattttttcattaatagttggatgatgccaa |
212 |
Q |
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| T |
26993 |
gggtttggtgcagtctttttctaaacttactggaatgtaatcaatagagatgtggagaatgctgtcctagattttttcattaatagctggatgatgccaa |
26894 |
T |
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| Q |
213 |
acttcaatgccaacactcttattttaatccctaaaattccaaatgcggatgaagtcacacactatagaccaattgctttagccaacttcaagtacaaaat |
312 |
Q |
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| T |
26893 |
acttcaatgccaacactcttattttaatccctaaaattccaaatgctgatgaagacacacactatagaccaattgctttagccaacttcaagtacaaaat |
26794 |
T |
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| Q |
313 |
aatttcaaagattttagctgatagggttgctgccataatgcccacaatcatttctcctgagcaaaaaggatttatacaaggaagacaaatgagagattgt |
412 |
Q |
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| T |
26793 |
aatttcaaaaattttagctgatagggttgctgccataatgccaacaatcatttctcctgagcaaaaaggatttatacaaggaagacaaatgagagattgt |
26694 |
T |
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| Q |
413 |
atatgcctgacatctgaagcaataaatcaacttgataaaagaactt-----------ttggctttcaaggttgatatagcaaaggcttttgacactattg |
501 |
Q |
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| T |
26693 |
atatgcctggcatctgaagcaataaatcaacttgataaaagaacttttggaggtaatttggctttcaaggttgatatagcaaaggcttttgacactattg |
26594 |
T |
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| Q |
502 |
agtggtcttttttgcttaaagtcttatcaaattttggcttcaatgaaaaattctgcaactggatcaaggtaatcttagaatctgctactctttcaatt |
599 |
Q |
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| T |
26593 |
agtggtcttttttgcttaaagtcttatcaaattttggcttcaatgaaaaattctgcaactggatcaaggtaatcttagaatctgctactctttcaatt |
26496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 23111556 - 23111600
Alignment:
| Q |
278 |
agaccaattgctttagccaacttcaagtacaaaataatttcaaag |
322 |
Q |
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| T |
23111556 |
agaccaattgccttagccaacttcaagttcaagattatttcaaag |
23111600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 13503630 - 13503658
Alignment:
| Q |
200 |
tggatgatgccaaacttcaatgccaacac |
228 |
Q |
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| T |
13503630 |
tggatgatgccaaacttcaatgccaacac |
13503658 |
T |
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