View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_112 (Length: 255)

Name: NF16533_low_112
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_112
NF16533_low_112
[»] chr8 (5 HSPs)
chr8 (1-75)||(37264724-37264798)
chr8 (176-244)||(37264898-37264966)
chr8 (183-244)||(37261132-37261193)
chr8 (176-244)||(37276848-37276916)
chr8 (176-244)||(37280697-37280765)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37264724 - 37264798
Alignment:
Q  1 ccatcggctttcctcacacttcggattattactataaaatgtatgtacatcatcaaccctttttctacgactact 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  37264724 ccatcggctttcctcacacttcggattattactataaaatgtatgtacatcatcaacctttttcctacgactact 37264798  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 37264898 - 37264966
Alignment:
Q  176 atggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37264898 atggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtctcgcctatgct 37264966  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 37261132 - 37261193
Alignment:
Q  183 attcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgct 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37261132 attcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgct 37261193  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 37276848 - 37276916
Alignment:
Q  176 atggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgct 244  Q
    ||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  37276848 atggcacattcaaggcatgttgttattctagcccttgtaatgttagccatgattggccttgcctatgct 37276916  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 37280697 - 37280765
Alignment:
Q  176 atggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgct 244  Q
    ||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  37280697 atggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgct 37280765  T

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