View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_115 (Length: 252)
Name: NF16533_low_115
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_115 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 8935280 - 8935519
Alignment:
| Q |
13 |
cagagagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagttt |
112 |
Q |
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| T |
8935280 |
cagagagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagttt |
8935379 |
T |
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| Q |
113 |
cacattaggcatatatcaatgtcgtgtatcaactggtacacctttttataaagctaaacatgtaatagtagcatgtgtttccatcatattttatgtttat |
212 |
Q |
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| T |
8935380 |
cacattaggcatatatcaatgtcgtgtatcaactggtacacctttttataaagctaaacatgtaatagtagcatgtgcttccattatattgtatgtttat |
8935479 |
T |
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| Q |
213 |
atttctcaagtctttagtcctatttttcctttgtcatttt |
252 |
Q |
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| T |
8935480 |
atttctcaagtctttagtcctatttttcctttgtcatttt |
8935519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 4765208 - 4765307
Alignment:
| Q |
45 |
gttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatgtcgtgtatcaa |
144 |
Q |
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| T |
4765208 |
gttacaaattataatttgttgt--tcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattagacatacatcgatgttgtgtatcaa |
4765305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 31719694 - 31719630
Alignment:
| Q |
17 |
gagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagc |
81 |
Q |
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| T |
31719694 |
gagaaatttgttgaaagaatctacgctagttatgagttataatttgttgtgttcatttattgagc |
31719630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 35045596 - 35045650
Alignment:
| Q |
43 |
tagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaac |
97 |
Q |
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| T |
35045596 |
tagttacgatttataatttgttgtgttcaattattgagcaacaacaacatttaac |
35045650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 4974415 - 4974303
Alignment:
| Q |
34 |
aatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatg |
133 |
Q |
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| T |
4974415 |
aatctacgttagttacgatttataatttgttgtgttcggttatttaacagcatcgatgtttaagagtaaatcgtagtattgcattagacatacattaatg |
4974316 |
T |
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| Q |
134 |
tcgtgtatcaact |
146 |
Q |
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| T |
4974315 |
ttatgtatcaact |
4974303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 4992323 - 4992211
Alignment:
| Q |
34 |
aatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatg |
133 |
Q |
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| T |
4992323 |
aatctacgttagttacgatttataatttgttgtgttcggttatttaacagcatcgatgtttaagagtaaatcgtagtattgcattagacatacattaatg |
4992224 |
T |
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| Q |
134 |
tcgtgtatcaact |
146 |
Q |
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| T |
4992223 |
ttatgtatcaact |
4992211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 15250543 - 15250467
Alignment:
| Q |
10 |
gcacagagagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaa |
86 |
Q |
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||||||||||||| |||| | |||||||||| |||||||| |||||||| ||||| || | |||||||||||||| |
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| T |
15250543 |
gcacagagagaaacttgtcggaagaatctactttagttacggtttataatttgttggcttaagttattgagcagcaa |
15250467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 28858911 - 28858811
Alignment:
| Q |
44 |
agttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatgtcgtgtatca |
143 |
Q |
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| T |
28858911 |
agttacaatt-ataatctgttatgttcattaatttagcagcaaccgcgtttaagaataaatcacagtatcacatta--catatatcaatgccgtgtatca |
28858815 |
T |
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| Q |
144 |
actg |
147 |
Q |
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|||| |
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| T |
28858814 |
actg |
28858811 |
T |
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