View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_119 (Length: 249)

Name: NF16533_low_119
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_119
NF16533_low_119
[»] chr5 (12 HSPs)
chr5 (1-148)||(31619276-31619421)
chr5 (41-164)||(35185252-35185375)
chr5 (20-166)||(2611140-2611287)
chr5 (39-157)||(22180256-22180374)
chr5 (44-159)||(14863335-14863450)
chr5 (44-166)||(7609532-7609654)
chr5 (20-159)||(12187158-12187297)
chr5 (44-159)||(21052627-21052742)
chr5 (44-159)||(11320125-11320239)
chr5 (176-228)||(31619423-31619475)
chr5 (114-164)||(18677920-18677970)
chr5 (41-97)||(16802023-16802079)
[»] chr1 (19 HSPs)
chr1 (20-181)||(40391196-40391356)
chr1 (20-164)||(33827818-33827963)
chr1 (20-164)||(33840002-33840147)
chr1 (20-159)||(26855825-26855964)
chr1 (20-158)||(31884460-31884598)
chr1 (20-145)||(50127361-50127486)
chr1 (57-145)||(44109083-44109172)
chr1 (44-159)||(15419649-15419765)
chr1 (68-166)||(48282883-48282981)
chr1 (43-159)||(50468805-50468922)
chr1 (44-157)||(30627616-30627730)
chr1 (44-94)||(16963639-16963689)
chr1 (44-100)||(13534555-13534611)
chr1 (44-158)||(19066859-19066973)
chr1 (44-158)||(19114749-19114863)
chr1 (44-97)||(27742552-27742605)
chr1 (44-100)||(18910463-18910519)
chr1 (77-164)||(20471326-20471413)
chr1 (77-164)||(20560124-20560211)
[»] chr3 (19 HSPs)
chr3 (20-166)||(42163598-42163745)
chr3 (20-166)||(44291222-44291368)
chr3 (44-166)||(15671109-15671231)
chr3 (44-162)||(23208140-23208256)
chr3 (44-165)||(27143998-27144120)
chr3 (20-135)||(43862916-43863032)
chr3 (42-155)||(32720523-32720637)
chr3 (68-166)||(44041316-44041415)
chr3 (44-159)||(49710944-49711058)
chr3 (44-147)||(43014644-43014750)
chr3 (48-157)||(43652470-43652579)
chr3 (52-149)||(35322016-35322111)
chr3 (47-148)||(36258679-36258782)
chr3 (44-147)||(52992443-52992546)
chr3 (49-166)||(17109526-17109644)
chr3 (44-149)||(47877286-47877392)
chr3 (71-146)||(49419063-49419139)
chr3 (62-100)||(17560725-17560763)
chr3 (106-159)||(6785793-6785845)
[»] chr7 (11 HSPs)
chr7 (20-166)||(22035707-22035854)
chr7 (43-166)||(45907026-45907149)
chr7 (48-165)||(16861680-16861797)
chr7 (47-157)||(19689502-19689612)
chr7 (44-147)||(36636018-36636122)
chr7 (44-158)||(8117444-8117558)
chr7 (44-147)||(16563480-16563584)
chr7 (44-147)||(16602078-16602182)
chr7 (70-149)||(41434726-41434805)
chr7 (115-166)||(27364663-27364714)
chr7 (45-165)||(21798798-21798917)
[»] chr4 (10 HSPs)
chr4 (20-149)||(31647696-31647825)
chr4 (48-149)||(38320127-38320229)
chr4 (70-159)||(31241950-31242040)
chr4 (43-159)||(19147147-19147263)
chr4 (35-164)||(47397595-47397724)
chr4 (106-159)||(38319539-38319592)
chr4 (20-92)||(20542717-20542788)
chr4 (44-124)||(3319283-3319364)
chr4 (43-79)||(14615177-14615213)
chr4 (57-97)||(51759207-51759247)
[»] chr2 (9 HSPs)
chr2 (44-149)||(21646486-21646591)
chr2 (44-166)||(19889744-19889867)
chr2 (36-145)||(37913017-37913126)
chr2 (20-99)||(11610469-11610548)
chr2 (41-147)||(32345474-32345580)
chr2 (44-100)||(18243797-18243853)
chr2 (39-159)||(23760592-23760711)
chr2 (42-149)||(23788415-23788521)
chr2 (106-159)||(18243303-18243356)
[»] scaffold0886 (1 HSPs)
scaffold0886 (20-147)||(1116-1243)
[»] chr8 (12 HSPs)
chr8 (44-166)||(28462535-28462657)
chr8 (44-158)||(39209363-39209476)
chr8 (20-166)||(39065528-39065672)
chr8 (44-148)||(900243-900348)
chr8 (48-168)||(39534128-39534248)
chr8 (44-166)||(41675663-41675785)
chr8 (44-144)||(37919398-37919499)
chr8 (48-159)||(29795508-29795619)
chr8 (66-149)||(20821911-20821994)
chr8 (47-159)||(30924834-30924947)
chr8 (44-97)||(38362265-38362318)
chr8 (70-146)||(14110626-14110701)
[»] scaffold0117 (1 HSPs)
scaffold0117 (43-149)||(16839-16945)
[»] scaffold0078 (1 HSPs)
scaffold0078 (20-158)||(861-1000)
[»] scaffold0034 (1 HSPs)
scaffold0034 (39-157)||(22425-22543)
[»] scaffold0006 (1 HSPs)
scaffold0006 (44-149)||(38800-38905)
[»] chr6 (6 HSPs)
chr6 (44-159)||(21809805-21809920)
chr6 (20-165)||(17506239-17506386)
chr6 (47-164)||(4803157-4803275)
chr6 (12-132)||(10252931-10253054)
chr6 (44-97)||(10008191-10008245)
chr6 (20-97)||(19418569-19418647)
[»] scaffold0068 (1 HSPs)
scaffold0068 (43-164)||(52010-52131)
[»] scaffold1372 (1 HSPs)
scaffold1372 (106-166)||(1263-1322)
[»] scaffold0005 (1 HSPs)
scaffold0005 (43-79)||(202163-202199)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31619276 - 31619421
Alignment:
Q  1 ttaatttaatattttcgaaaatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt 100  Q
    ||||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  31619276 ttaatttaatattttggaaaatgttaaccagtgcctctg-ggcattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaattattattt 31619374  T
Q  101 caaagaagtgacagtttatattttcaagacagaaaattctatttatag 148  Q
    || ||||||||| ||||||||||  |||||||||||||||||||||||    
T  31619375 catagaagtgac-gtttatatttctaagacagaaaattctatttatag 31619421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 35185252 - 35185375
Alignment:
Q  41 ggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaattct 140  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |  | | |||||||||||||||||||||||||| ||||||||    
T  35185252 ggtattggttaagcaccaaataaaataagtttttattaaaaagtaatgtaattattactaaataaaagtgacagtttatattttcaagacataaaattct 35185351  T
Q  141 atttatagagtccttaaccggtgc 164  Q
    ||||||||| || |||||| ||||    
T  35185352 atttatagattctttaaccagtgc 35185375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 2611287 - 2611140
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| || ||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||| |||    
T  2611287 aatgttaaccagggcccctggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagctta 2611188  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    ||||| ||||||| ||| ||||||||||||| ||||||||| ||||||    
T  2611187 tatttccaagacataaatttctatttatagattccttaaccagtgccc 2611140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 22180374 - 22180256
Alignment:
Q  39 gaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaatt 138  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||| | | || ||||||||||||||||||| | ||||||||    
T  22180374 gaggtattggttaagcaccaaataaaataaatttttattaaaaaataatataattattatttaataaaaatgacagtttatattttcaaaatagaaaatt 22180275  T
Q  139 ctatttatagagtccttaa 157  Q
     |||||||||| |||||||    
T  22180274 ttatttatagattccttaa 22180256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 14863335 - 14863450
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||||||||||  || ||||||||||||||||| |||||||||||||| || | || ||||||||||||||||||||||||||  ||||| |||    
T  14863335 attggttaagcaccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtgacagtttatattttcaagaca-taaattatat 14863433  T
Q  143 ttatagagtccttaacc 159  Q
    ||||||| || ||||||    
T  14863434 ttatagattctttaacc 14863450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 7609654 - 7609532
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || | || || ||| ||||||||||| ||| |||| ||||||||     
T  7609654 attggttaagcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgatagtttatatttccaaaacag-aaattctaa 7609556  T
Q  143 ttatagagtccttaaccggtgccc 166  Q
    ||||||| ||||||| | ||||||    
T  7609555 ttatagattccttaatcagtgccc 7609532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 12187158 - 12187297
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttatt-aaaaagtaatgtaattattatttcaaagaagtgacagttta 118  Q
    |||||||||  ||| | |||||| |||| ||||||||||||| |  |||||||||||| ||||| |||||||||||||| ||  || ||||||| |||||    
T  12187158 aatgttaacctgtgtccctgaggcattgattaagcaccaaataaggtaagtttttattaaaaaaataatgtaattattacttgtaaaaagtgaccgttta 12187257  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaacc 159  Q
    ||||| ||||||| |||||||||||| |||| || ||||||    
T  12187258 tatttccaagaca-aaaattctatttgtagattctttaacc 12187297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 21052742 - 21052627
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||||||||||| ||| ||||||||||||||||| | |||||||||||| || | || |||||||||||||||||| |||||  | ||||| |||    
T  21052742 attggttaagcaccaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttatatttgcaaga-tggaaattttat 21052644  T
Q  143 ttatagagtccttaacc 159  Q
    ||||| | |||||||||    
T  21052643 ttataaattccttaacc 21052627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 11320125 - 11320239
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||||||||||  |  ||| |||||||||||||||||||||||||||| || | || ||||||||||||||||||  |||| || ||||| ||     
T  11320125 attggttaagcaccaaaaaagttaa-tttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttctaagatag-aaattttaa 11320222  T
Q  143 ttatagagtccttaacc 159  Q
    ||||||| |||||||||    
T  11320223 ttatagattccttaacc 11320239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 31619423 - 31619475
Alignment:
Q  176 gaccctttaatcgaattttttccatttgtataaaccagaaatcgaacacctaa 228  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  31619423 gaccctttaatcgaattttttccatttgtaaaaatcagaaattgaacacctaa 31619475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 18677970 - 18677920
Alignment:
Q  114 gtttatattttcaagacagaaaattctatttatagagtccttaaccggtgc 164  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  18677970 gtttatattttcaagatagaaaattctatttatagattccttaaccagtgc 18677920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 16802023 - 16802079
Alignment:
Q  41 ggtattggttaagca-ccaaatgaaataagtttttattaaaaagtaatgtaattatta 97  Q
    ||||||||||||||| |||||  |||||| ||||||| ||||||||||||||||||||    
T  16802023 ggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattatta 16802079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 40391356 - 40391196
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| |||  ||| |||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||| || | || |||||||||||||    
T  40391356 aatgttaaccagtatctccgaggcattggttaagcaccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagtgacagttta 40391257  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgcccggttaacaagaccct 181  Q
    ||||||||||||||||||||| ||||||||| | ||||| | ||||||  |||||||||||||    
T  40391256 tattttcaagacagaaaattcgatttatagatttcttaatcagtgccc--ttaacaagaccct 40391196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 33827963 - 33827818
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| | || ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| || | || ||||||  |||||    
T  33827963 aatgttaaccaatgtctctgaggtattggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgttta 33827864  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgc 164  Q
    ||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  33827863 tatttccaagacagaaaattttatttatagattccttaaccagtgc 33827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 33840002 - 33840147
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| | || ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| || | || ||||||  |||||    
T  33840002 aatgttaaccaatgtctctgaggtattggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgttta 33840101  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgc 164  Q
    ||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  33840102 tatttccaagacagaaaattttatttatagattccttaaccagtgc 33840147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 26855964 - 26855825
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    |||||||||  ||||||| | || |||||||||||||||||| || ||| |||||||||||| ||||||||||||||| || | || ||||||||| |||    
T  26855964 aatgttaaccggtgcctccggggcattggttaagcaccaaataaagtaaatttttattaaaa-gtaatgtaattattacttgataaaaagtgacagatta 26855866  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaacc 159  Q
    ||||| ||||||| ||||||||||||||||| || ||||||    
T  26855865 tatttccaagacaaaaaattctatttatagattctttaacc 26855825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 31884598 - 31884460
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| | |||| | |||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||| | || || || |||||||    
T  31884598 aatgttaaccattgccccggaggcattggttaagcaccaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaaatgtcagttta 31884499  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaac 158  Q
    ||||| ||||| || |||||||||||||||| | ||||||    
T  31884498 tatttccaagatag-aaattctatttatagatttcttaac 31884460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 50127486 - 50127361
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| |||||| | | || |||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |  | || || ||||||||||    
T  50127486 aatgttaaccagtgcccccggggcattggttaagtaccaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaatgacagttta 50127387  T
Q  119 tattttcaagacagaaaattctattta 145  Q
    ||||| |||||||| ||||||||||||    
T  50127386 tatttccaagacag-aaattctattta 50127361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 44109172 - 44109083
Alignment:
Q  57 caaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctattta 145  Q
    |||||||| |||||||||||||||||||||||||||||||| || | || ||| |||||||||||||| ||||| |||||||||||||||    
T  44109172 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagggacagtttatatttccaagatagaaaattctattta 44109083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 15419765 - 15419649
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||| |||||||| || ||| |||||||||||||||||| ||||||||| || | || |||| ||||||||||||| ||| ||| ||||||||||    
T  15419765 attggttaaacaccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagtaacagtttatatttccaatacaaaaaattctat 15419666  T
Q  143 ttatagagtccttaacc 159  Q
    ||||||| || ||||||    
T  15419665 ttatagattcattaacc 15419649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 48282981 - 48282883
Alignment:
Q  68 agtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    |||||||| |||||||||||||||||||||  | | || ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  48282981 agtttttactaaaaagtaatgtaattattacctgataaaaagtgacagattatattttcaagacag-aaattctatttatagattccttaaccagtgccc 48282883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 50468922 - 50468805
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattcta 141  Q
    ||||||||||| | ||| | || ||| |||||||||||||||||||||||||||| || | || || |||||| ||||||||  |||| |||||||| ||    
T  50468922 tattggttaagtatcaagtaaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatatttctaagatagaaaatttta 50468823  T
Q  142 tttatagagtccttaacc 159  Q
    |||||||| |||||||||    
T  50468822 tttatagattccttaacc 50468805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 30627730 - 30627616
Alignment:
Q  44 attggttaagcaccaaatgaaataagttttta-ttaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattcta 141  Q
    ||||||||||||||||  ||| ||| |||||| ||||||||||||||||| |||| || | || ||||||||| |||||||| ||||||| ||| |||||    
T  30627730 attggttaagcaccaagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacaggttatatttccaagacataaa-ttcta 30627632  T
Q  142 tttatagagtccttaa 157  Q
    |||||||| |||||||    
T  30627631 tttatagattccttaa 30627616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 16963689 - 16963639
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaatta 94  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  16963689 attggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaatta 16963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 13534611 - 13534555
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt 100  Q
    ||||||||||| |||||| || ||| |||||||||||||||||||||||||||||||    
T  13534611 attggttaagcgccaaataaagtaaatttttattaaaaagtaatgtaattattattt 13534555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 19066859 - 19066973
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattatta-tttcaaagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||||| |||||| || ||| |||||||||||||||| ||||||||||| ||   || |||||||| |||||||||  |||||| | ||||||||    
T  19066859 attggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattctat 19066957  T
Q  143 ttatagagtccttaac 158  Q
    ||||||| | ||||||    
T  19066958 ttatagatttcttaac 19066973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 19114749 - 19114863
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattatta-tttcaaagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||||| |||||| || ||| |||||||||||||||| ||||||||||| ||   || |||||||| |||||||||  |||||| | ||||||||    
T  19114749 attggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattctat 19114847  T
Q  143 ttatagagtccttaac 158  Q
    ||||||| | ||||||    
T  19114848 ttatagatttcttaac 19114863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27742552 - 27742605
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattatta 97  Q
    |||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  27742552 attggttaagcaacaaaagaagtaattttttattaaaaagtaatgtaattatta 27742605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 18910519 - 18910463
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt 100  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  18910519 attgattaaacaccaaaagaaataaatttttattaaaaagtaatgtaatcattattt 18910463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 20471413 - 20471326
Alignment:
Q  77 taaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttatagagtccttaaccggtgc 164  Q
    |||||||||||||||||||| ||| | || ||||||||||||||||||  |||||| | |||| |||||||||| | ||||||| ||||    
T  20471413 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc 20471326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 20560124 - 20560211
Alignment:
Q  77 taaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttatagagtccttaaccggtgc 164  Q
    |||||||||||||||||||| ||| | || ||||||||||||||||||  |||||| | |||| |||||||||| | ||||||| ||||    
T  20560124 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc 20560211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 42163745 - 42163598
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    |||||||||  ||||||| | || ||||||||  ||||||||||| |||||||||||||||||||||||||||||||| || | || ||||||| |||||    
T  42163745 aatgttaaccggtgcctccggggcattggttacacaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacggttta 42163646  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    ||||| ||||||||||||||||||| ||||| ||||||||| ||||||    
T  42163645 tatttccaagacagaaaattctattaatagattccttaaccagtgccc 42163598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 44291368 - 44291222
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| |||||| | | || ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| || | || |||||||||||||    
T  44291368 aatgttaaccagtgcccccggggcattggttaagcaccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacagttta 44291269  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||||    
T  44291268 tatttccaagacag-aaattctatttatagattccttaaccagtgccc 44291222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 15671231 - 15671109
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||||||  |||||| |||||| |||    
T  15671231 attggttaagaaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttcgaagaca-aaaattttat 15671133  T
Q  143 ttatagagtccttaaccggtgccc 166  Q
    ||||||| ||||||||| ||||||    
T  15671132 ttatagattccttaaccagtgccc 15671109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 23208256 - 23208140
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaatta-ttatttcaaagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||  ||||||| ||||| |||||||||||||||||||||||||| ||| |   || |||||||||||||||||||||||||||||||||||||    
T  23208256 attggttaaataccaaataaaatacgtttttattaaaaagtaatgtaattacttaat---aaaaagtgacagtttatattttcaagacagaaaattctat 23208160  T
Q  143 ttatagagtccttaaccggt 162  Q
    ||||||| | ||||||||||    
T  23208159 ttatagatttcttaaccggt 23208140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 27143998 - 27144120
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || | || |||| |||||||||||||  || ||||||||||||||    
T  27143998 attggttaagcaacaaatgaactaagtttttattaaaaaataatgtaattattacttaataaaaagtcacagtttatatttctaatacagaaaattctat 27144097  T
Q  143 ttatagagtccttaaccggtgcc 165  Q
    ||||||| | ||||||| |||||    
T  27144098 ttatagatttcttaaccagtgcc 27144120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 43862916 - 43863032
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    |||||||||  ||||| ||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || | ||  ||||||||||||    
T  43862916 aatgttaaccggtgcccctggggcattggttaagccccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgacagttta 43863015  T
Q  119 tattttcaagacagaaa 135  Q
    ||||| |||||||||||    
T  43863016 tatttccaagacagaaa 43863032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 32720637 - 32720523
Alignment:
Q  42 gtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaaga-agtgacagtttatattttcaagacagaaaattct 140  Q
    ||||||||||||||| |||| || ||||||||||||||||| |||| ||||||||| || | | | ||||||||||||||||||||||| ||||||||||    
T  32720637 gtattggttaagcactaaattaagtaagtttttattaaaaaataatataattattacttaataaatagtgacagtttatattttcaagaaagaaaattct 32720538  T
Q  141 atttatagagtcctt 155  Q
    ||| ||||| |||||    
T  32720537 attaatagattcctt 32720523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 44041415 - 44041316
Alignment:
Q  68 agtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    ||||| |||||||||||||||||||||||| || | || |||||||||||||||||  ||||||||||||||||||||||||| || |||||| ||||||    
T  44041415 agtttatattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattaccaagacagaaaattctatttatagattcattaaccagtgccc 44041316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 49710944 - 49711058
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaattctatt 143  Q
    |||| ||||||||||||| |||||||||||||||||||| |||| ||||||||||||  || || | ||| |||||||||  ||||||| ||||||||||    
T  49710944 attgattaagcaccaaataaaataagtttttattaaaaattaatataattattatttataaaaaataacattttatatttctaagacag-aaattctatt 49711042  T
Q  144 tatagagtccttaacc 159  Q
    |||||| |||||||||    
T  49711043 tatagattccttaacc 49711058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 43014644 - 43014750
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttc---aaagaagtgacagtttatattttcaagacagaaaattct 140  Q
    |||| ||||||||||||| || ||||||||| ||||||||||||||||||| |||| |   | | |||||||| ||||||||| |||||||||||||| |    
T  43014644 attgattaagcaccaaataaagtaagtttttgttaaaaagtaatgtaattactattactaaataaaagtgacaatttatatttccaagacagaaaattat 43014743  T
Q  141 atttata 147  Q
    |||||||    
T  43014744 atttata 43014750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 43652579 - 43652470
Alignment:
Q  48 gttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||| | | || || |||||| |||||||| ||||| || ||||| |||||||    
T  43652579 gttaagcaccaaatgaagtaagtttctactaaaaagtaatgtaattattatctgataaaaaatgacagattatatttccaagatag-aaattttatttat 43652481  T
Q  147 agagtccttaa 157  Q
    ||| |||||||    
T  43652480 agattccttaa 43652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 35322016 - 35322111
Alignment:
Q  52 agcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttataga 149  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| || | || |||||| |||||||||||  |||||  |||||||||||||||||    
T  35322016 agcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaagac--aaaattctatttataga 35322111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 36258679 - 36258782
Alignment:
Q  47 ggttaagcaccaaatgaaataagtttttattaaaaa-gtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctattt 144  Q
    |||||| |||||||| || ||||||||||||||||| |||||||||| |||| || | || || ||||| |||||||||  |||||||||||||||||||    
T  36258679 ggttaaacaccaaataaagtaagtttttattaaaaaagtaatgtaatgattacttaataaaaaatgacattttatatttctaagacagaaaattctattt 36258778  T
Q  145 atag 148  Q
    ||||    
T  36258779 atag 36258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 52992443 - 52992546
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaattctatt 143  Q
    |||||||||||||||||| || ||| ||||||  ||||| |||||||||||||| |   || || ||| ||||||||||||||| |||||||||| ||||    
T  52992443 attggttaagcaccaaataaagtaattttttaccaaaaaataatgtaattattactaataaaaaatgatagtttatattttcaaaacagaaaattttatt 52992542  T
Q  144 tata 147  Q
    ||||    
T  52992543 tata 52992546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 17109644 - 17109526
Alignment:
Q  49 ttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaa-gtgacagtttatattttcaagacagaaaattctatttata 147  Q
    |||| ||| |||| || ||| ||||||||||||||| |||||||||||| || | | || || ||||||||||||| ||||| |||||||||||||||||    
T  17109644 ttaaacactaaataaagtaaatttttattaaaaagttatgtaattattacttaataaaatgttacagtttatatttccaagatagaaaattctatttata 17109545  T
Q  148 gagtccttaaccggtgccc 166  Q
     | | ||||||| ||||||    
T  17109544 aatttcttaacccgtgccc 17109526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 47877392 - 47877286
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||| ||||||||||||| || ||||||||||||| || |||||||||||||| | || || ||| |||||||||||| || | | |||||| |||    
T  47877392 attggttatgcaccaaatgaaacaaatttttattaaaaaatagtgtaattattatttaataaaaaatgatagtttatatttttaaaatataaaattttat 47877293  T
Q  143 ttataga 149  Q
    |||||||    
T  47877292 ttataga 47877286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 49419139 - 49419063
Alignment:
Q  71 ttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    |||||||||||||| |||||||||||| || | || |||||||| |||||||||  || ||||||||||||||||||    
T  49419139 ttttattaaaaagttatgtaattattagttaataaaaagtgacaatttatatttctaatacagaaaattctatttat 49419063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 17560725 - 17560763
Alignment:
Q  62 gaaataagtttttattaaaaagtaatgtaattattattt 100  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  17560725 gaaataaatttttattaaaaattaatgtaattattattt 17560763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 6785845 - 6785793
Alignment:
Q  106 aagtgacagtttatattttcaagacagaaaattctatttatagagtccttaacc 159  Q
    |||| ||| ||||||||||||||||| |||||||||||| |||| |||||||||    
T  6785845 aagtaacattttatattttcaagaca-aaaattctatttgtagaatccttaacc 6785793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 22035707 - 22035854
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||||| |||||| | || || |||||||  ||||||||| ||||||||||||||||| |||||||||||||| ||   || |||||||||||||    
T  22035707 aatgttaactaatgcctccggggcatcggttaagttccaaatgaagtaagtttttattaaaaaataatgtaattattacttattaaaaagtgacagttta 22035806  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    ||||| ||||||||||||||||||||||||| || |||||| ||||||    
T  22035807 tatttccaagacagaaaattctatttatagattcattaaccagtgccc 22035854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 45907149 - 45907026
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattcta 141  Q
    |||||||||||||  ||| ||| |||||||||||||||||||||||||||||||| || | || |||||||||||||||||| ||||||| |||| ||||    
T  45907149 tattggttaagcataaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttacaagaca-aaaaatcta 45907051  T
Q  142 tttatagagtccttaaccggtgccc 166  Q
    |||||||| ||||||||| ||||||    
T  45907050 tttatagattccttaacccgtgccc 45907026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 16861680 - 16861797
Alignment:
Q  48 gttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||| | || || ||||||||||||||| |||||||  |||||||||||||    
T  16861680 gttaagcaccaaaagaaataaggttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttccaagaca-taaattctatttat 16861778  T
Q  147 agagtccttaaccggtgcc 165  Q
    ||| | |||||||||||||    
T  16861779 agatttcttaaccggtgcc 16861797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 19689502 - 19689612
Alignment:
Q  47 ggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctattta 145  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||||| | | ||||||| ||||||||||| ||||| ||||| || ||||||    
T  19689502 ggttaaacaccaaatgaagtaagtttt-attaaaaagtaatgtaattattatttaatacgaagtgatagtttatatttacaagatagaaagttgtattta 19689600  T
Q  146 tagagtccttaa 157  Q
    |||| |||||||    
T  19689601 tagattccttaa 19689612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 36636122 - 36636018
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||||||||| || | || | ||||| |||||||| | ||||| ||||||||||||    
T  36636122 attggttaagcaccaaataaagtaagtttttattaaaaaataatgtaattattacttaataaaaggtgaccgtttatatctccaagatagaaaattctat 36636023  T
Q  143 ttata 147  Q
    |||||    
T  36636022 ttata 36636018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 8117558 - 8117444
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||| | || || | ||| |||||||||||||||||  |||||||||    
T  8117558 attggttaaacgctaaatgaagtaagtttttattaaaaagtaatgtaattattatttaataaaaaataacaatttatattttcaagaca-taaattctat 8117460  T
Q  143 ttatagagtccttaac 158  Q
    ||||||| ||| ||||    
T  8117459 ttatagattccataac 8117444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 16563584 - 16563480
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt-caaagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||| |  | || | | ||||||||||| ||||| | ||||||||||    
T  16563584 attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat 16563485  T
Q  143 ttata 147  Q
    |||||    
T  16563484 ttata 16563480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 16602078 - 16602182
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt-caaagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||| |  | || | | ||||||||||| ||||| | ||||||||||    
T  16602078 attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat 16602177  T
Q  143 ttata 147  Q
    |||||    
T  16602178 ttata 16602182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 41434726 - 41434805
Alignment:
Q  70 tttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttataga 149  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||||||||||||  ||||||| ||||| ||||||||||    
T  41434726 tttttattaaaaaataatgtaattattatttgataaaaagtgacagtttatatttctaagacag-aaattatatttataga 41434805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 27364663 - 27364714
Alignment:
Q  115 tttatattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||    
T  27364663 tttatatttccaagacataaaattctatttatagattccttaaccagtgccc 27364714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 21798798 - 21798917
Alignment:
Q  45 ttggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatt 143  Q
    |||||||||||||||| ||| ||| |||||||||| ||||||||||||||||| || |  | || |||||||||||| || |||||||  ||||||||||    
T  21798798 ttggttaagcaccaaaagaagtaa-tttttattaagaagtaatgtaattattacttaatgaaaaatgacagtttataattccaagaca-taaattctatt 21798895  T
Q  144 tatagagtccttaaccggtgcc 165  Q
    | | || | ||||||| |||||    
T  21798896 tttggatttcttaacccgtgcc 21798917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 31647696 - 31647825
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    |||||||||  ||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | || |||||| ||||||    
T  31647696 aatgttaaccggtgcccccgaggtattggttaagcaccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagtgatagttta 31647795  T
Q  119 tattttcaagacagaaaattctatttataga 149  Q
    |||||  ||||||| ||||||||||||||||    
T  31647796 tatttctaagacag-aaattctatttataga 31647825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 38320229 - 38320127
Alignment:
Q  48 gttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||    
T  38320229 gttaagcatcaaataaagtaagtttttattaaaaagtaatgtaattattacttaataagaagtgacagtttatatttccaagacagaaaattctatttat 38320130  T
Q  147 aga 149  Q
    |||    
T  38320129 aga 38320127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 31242040 - 31241950
Alignment:
Q  70 tttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttatagagtccttaacc 159  Q
    ||||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  31242040 tttttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagattccttaacc 31241950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 19147263 - 19147147
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattcta 141  Q
    ||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||    
T  19147263 tattgattaagcaccaaaagaagtaagtttttattaataagtaatgtaattattatttgataaaaagtgacagtttatattttcaagacag-aaattcta 19147165  T
Q  142 tttatagagtccttaacc 159  Q
     ||||||| | |||||||    
T  19147164 cttatagatttcttaacc 19147147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 47397595 - 47397724
Alignment:
Q  35 ctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacaga 133  Q
    ||||| |||||||||||||||||||| | | ||| |||||||| ||||||||| |||||||||||| | || ||||||||||||||||||  || | ||     
T  47397595 ctctgcggtattggttaagcaccaaaagtagtaaatttttatttaaaagtaatataattattatttgataaaaagtgacagtttatatttctaaaatag- 47397693  T
Q  134 aaattctatttatagagtccttaaccggtgc 164  Q
    |||||||||||||||| ||||||||| ||||    
T  47397694 aaattctatttatagattccttaaccagtgc 47397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 38319592 - 38319539
Alignment:
Q  106 aagtgacagtttatattttcaagacagaaaattctatttatagagtccttaacc 159  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  38319592 aagtgacagtttatattttcaaaacagaaaattctatttatagattccttaacc 38319539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 20542788 - 20542717
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaat 92  Q
    |||||||||||||||| | | || ||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  20542788 aatgttaactagtgccccgg-ggcattggttaagcaccaaaagaattaagtttttattaaaaagtaatataat 20542717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 3319364 - 3319283
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatatttt 124  Q
    |||| ||||||| |||| ||||||| |||||||||||| ||||| |||||||||||| |  | || ||||||||||||||||    
T  3319364 attgattaagcatcaaaagaaataaatttttattaaaaggtaatataattattatttgatgaaaaatgacagtttatatttt 3319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 14615213 - 14615177
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaa 79  Q
    |||||||||||||||||||||||||| ||||||||||    
T  14615213 tattggttaagcaccaaatgaaataaatttttattaa 14615177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 51759207 - 51759247
Alignment:
Q  57 caaatgaaataagtttttattaaaaagtaatgtaattatta 97  Q
    |||||||| ||||||||||||||||| ||||||| ||||||    
T  51759207 caaatgaagtaagtttttattaaaaaataatgtagttatta 51759247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 21646591 - 21646486
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaattctatt 143  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || | | |||||||| ||||||||| ||||||||||||||||||     
T  21646591 attggttaaacaccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaagtgacactttatatttccaagacagaaaattctatg 21646492  T
Q  144 tataga 149  Q
    ||||||    
T  21646491 tataga 21646486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 19889744 - 19889867
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || | || | ||||||  |||||||| ||| ||| ||||||||||    
T  19889744 attggttaagcatcaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaaggtgacatattatatttccaaaacataaaattctat 19889843  T
Q  143 ttatagagtccttaaccggtgccc 166  Q
    ||||||| | ||||||| ||||||    
T  19889844 ttatagatttcttaaccagtgccc 19889867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 37913126 - 37913017
Alignment:
Q  36 tctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaa 134  Q
    |||| ||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||||||| || | || ||||||| |||||||||||||||| | ||    
T  37913126 tctggggtattggttaagcatcaaaagaagtaagtttttattaaaaattaatgtgattattacttgataaaaagtgacggtttatattttcaagata-aa 37913028  T
Q  135 aattctattta 145  Q
    |||||||||||    
T  37913027 aattctattta 37913017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 11610548 - 11610469
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatt 99  Q
    ||||||||| |||||| | | || ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  11610548 aatgttaaccagtgcccccggggcattggttaagcaccaaatgaagtaagttttcattaaaaagtaatgcaattattatt 11610469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 32345474 - 32345580
Alignment:
Q  41 ggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattc 139  Q
    |||||||||||| ||  |||| || ||||||||||| ||||| |||| |||||||||||| | || || |||||||||||||||| ||||||||||||||    
T  32345474 ggtattggttaaacaataaataaagtaagtttttatcaaaaa-taatataattattatttaataaaaaatgacagtttatatttttaagacagaaaattc 32345572  T
Q  140 tatttata 147  Q
    ||||||||    
T  32345573 tatttata 32345580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 18243853 - 18243797
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt 100  Q
    |||||||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  18243853 attggttaagcaccaaataaagtaagtttttattaaaaagtaatataattattattt 18243797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 23760711 - 23760592
Alignment:
Q  39 gaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaatt 138  Q
    |||||||||||||||||| | |  || ||| ||||  |||||||||||||||||||||| || | | || | | |||||||||||| ||||||  |||||    
T  23760711 gaggtattggttaagcactacaaaaagtaaattttatttaaaaagtaatgtaattattacttgataaaaataagagtttatatttttaagaca-taaatt 23760613  T
Q  139 ctatttatagagtccttaacc 159  Q
     |||||||||| || ||||||    
T  23760612 atatttatagattcgttaacc 23760592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 23788521 - 23788415
Alignment:
Q  42 gtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattct 140  Q
    |||||| |||| |||||||  |||||| |||||||||||||||||||||||||||| || | || || ||| | ||||||||||||| | |  |||||||    
T  23788521 gtattgattaaacaccaaaa-aaataaatttttattaaaaagtaatgtaattattacttaataaaaaatgataatttatattttcaaaata-taaattct 23788424  T
Q  141 atttataga 149  Q
    |||||||||    
T  23788423 atttataga 23788415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 18243356 - 18243303
Alignment:
Q  106 aagtgacagtttatattttcaagacagaaaattctatttatagagtccttaacc 159  Q
    |||||| ||||||||||| ||| ||| |||||| |||||||||| |||||||||    
T  18243356 aagtgaaagtttatatttccaaaacaaaaaattttatttatagattccttaacc 18243303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 1243 - 1116
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    |||||||||  |||| |||||| ||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||| || | || |||||||||||||    
T  1243 aatgttaaccggtgcttctgagatattggttaagaatcaaataaaataagcttttattaaaaagtaatgtaattattacttaataaaaagtgacagttta 1144  T
Q  119 tattttcaagacagaaaattctatttata 147  Q
    ||||||||||| | |||||||||||||||    
T  1143 tattttcaaga-aaaaaattctatttata 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 28462657 - 28462535
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| || | || |||||| ||||||||||| ||||||| ||||||||||    
T  28462657 attggttaaacaccaaatgaagtaagtttttattaaaa-gtaatgtaattattacttaataaaaagtgatagtttatatttccaagacaaaaaattctat 28462559  T
Q  143 ttatagagtccttaaccggtgccc 166  Q
    ||||||| || |||||| ||||||    
T  28462558 ttatagattctttaaccagtgccc 28462535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 39209476 - 39209363
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaattctatt 143  Q
    ||||||||||||||||| ||| ||| ||||||||||||||| ||||| ||||||||| | | |||||||||||||||||| ||| |||||||||||||||    
T  39209476 attggttaagcaccaaacgaagtaaatttttattaaaaagtgatgta-ttattatttaataaaagtgacagtttatatttccaaaacagaaaattctatt 39209378  T
Q  144 tatagagtccttaac 158  Q
    |||| | ||||||||    
T  39209377 tataaattccttaac 39209363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 39065672 - 39065528
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    |||| |||||||||||||||  | ||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||||| || | || |||||||||||||    
T  39065672 aatgctaactagtgcctctggagcattggttaagcactaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagttta 39065573  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    |||||| ||||||| ||||||||||||||||  |||||||| ||||||    
T  39065572 tatttttaagacag-aaattctatttataga--ccttaaccagtgccc 39065528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 900348 - 900243
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||| |||||||| || |||||||||||||||||||||| ||||||||| || | || || |||||||||| ||||||||||||||||||| |||    
T  900348 attggttaaacaccaaataaagtaagtttttattaaaaagtaatataattattacttaataaaaaatgacagtttaaattttcaagacagaaaattatat 900249  T
Q  143 ttatag 148  Q
    ||||||    
T  900248 ttatag 900243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 39534248 - 39534128
Alignment:
Q  48 gttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||| || | ||   ||||||||||||||||||||||||| |||||||| ||||    
T  39534248 gttaagcaccaaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagtttatattttcaagacag-aaattctaattat 39534150  T
Q  147 agagtccttaaccggtgcccgg 168  Q
    ||| || ||||||  |||||||    
T  39534149 agattctttaacccatgcccgg 39534128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 41675785 - 41675663
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||||||||||| ||| ||| |||||||||||||| ||| ||||||||| || | || || ||| ||||||||||||||| |||| |||||||||    
T  41675785 attggttaagcaccaaaagaagtaaatttttattaaaaagaaatataattattacttgataaaaaatgatagtttatattttcaaaacag-aaattctat 41675687  T
Q  143 ttatagagtccttaaccggtgccc 166  Q
    || |||| ||||||| ||||||||    
T  41675686 ttgtagattccttaatcggtgccc 41675663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 37919398 - 37919499
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||||||| ||| || ||| |||||||||||||||||||||||||||| || | || || ||||||||||||||||||| ||| |||||| |||    
T  37919398 attggttaagcaccgaataaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacagtttatattttcaaaacaaaaaattttat 37919497  T
Q  143 tt 144  Q
    ||    
T  37919498 tt 37919499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 29795508 - 29795619
Alignment:
Q  48 gttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||| || | || ||||||||||||||| ||| |||| | |||||||||||| |    
T  29795508 gttaagcaccaaaagaattaagtttttgttaaaaagtaatgtaattattaattgataaaaagtgacagtttatagttttaagata-aaaattctattttt 29795606  T
Q  147 agagtccttaacc 159  Q
     || |||||||||    
T  29795607 ggattccttaacc 29795619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 20821911 - 20821994
Alignment:
Q  66 taagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctatttataga 149  Q
    |||||||||||||||||||||||||||||||| || | || |||||||| |||||||||| |||||| | |||||||| ||||||    
T  20821911 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagaca-acaattctatctataga 20821994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 30924834 - 30924947
Alignment:
Q  47 ggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctattta 145  Q
    |||||||||||||| ||| ||||||||| ||| |||||||||||||||||| || |  | ||||||| | ||||| || || |||| ||||||||||||     
T  30924834 ggttaagcaccaaaagaagtaagtttttgttagaaagtaatgtaattattacttgatgaaaagtgacggattatagttccatgacaaaaaattctatttt 30924933  T
Q  146 tagagtccttaacc 159  Q
    | || |||||||||    
T  30924934 tggattccttaacc 30924947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 38362318 - 38362265
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattatta 97  Q
    |||||||||||| ||||| || ||| |||||||||||||| |||||||||||||    
T  38362318 attggttaagcatcaaataaagtaaatttttattaaaaagcaatgtaattatta 38362265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 14110701 - 14110626
Alignment:
Q  70 tttttattaaaaagtaatgtaattattatttcaaagaagtgacagtttatattttcaagacagaaaattctatttat 146  Q
    ||||||||||||||| |||||||||||| ||  || ||||||| ||||||||||  |||||| |||||| |||||||    
T  14110701 tttttattaaaaagttatgtaattattacttataaaaagtgacggtttatatttctaagaca-aaaattatatttat 14110626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 16945 - 16839
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattcta 141  Q
    |||||||||||||||||| ||||||||||||||||||||| | || ||||||||| || | || ||||||||||||||||||||||||||| ||| ||||    
T  16945 tattggttaagcaccaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatattttcaagacag-aaactcta 16847  T
Q  142 tttataga 149  Q
    ||||||||    
T  16846 tttataga 16839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 1000 - 861
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagttta 118  Q
    ||||||||| ||||  |||| ||  |||||||| ||| |||| || ||| ||||||||| || |||||||||||||||||| | || || ||| ||||||    
T  1000 aatgttaaccagtgtttctggggatttggttaaacactaaataaagtaaatttttattagaatgtaatgtaattattatttaataaaaaatgatagttta 901  T
Q  119 tattttcaagacagaaaattctatttatagagtccttaac 158  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  900 tatttccaagacagaaaattctatttatagattccttaac 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 22543 - 22425
Alignment:
Q  39 gaggtattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaat 137  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| | || ||||||| |||||||||| ||| ||| ||| |    
T  22543 gaggcattggttaagcaccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgacggtttatatttccaacaca-aaagt 22445  T
Q  138 tctatttatagagtccttaa 157  Q
    | |||||||||| |||||||    
T  22444 tatatttatagattccttaa 22425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 38800 - 38905
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||||||||| || | || || ||||||||||||||| ||||| |  |||||||||    
T  38800 attggttaagaatcaaataaaataagtttttattaaaaagtaatgtaattattacttgataaaaaatgacagtttatatttccaagata-taaattctat 38898  T
Q  143 ttataga 149  Q
    |||||||    
T  38899 ttataga 38905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 21809920 - 21809805
Alignment:
Q  44 attggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattatttca-aagaagtgacagtttatattttcaagacagaaaattctat 142  Q
    ||||||||||| | |||| |||||||||||||||||||||||| |||||||||| || | || |||||||| |||||||||  |||||| | ||||||||    
T  21809920 attggttaagcgctaaataaaataagtttttattaaaaagtaacgtaattattacttgataaaaagtgacaatttatatttctaagaca-acaattctat 21809822  T
Q  143 ttatagagtccttaacc 159  Q
    ||||||| | |||||||    
T  21809821 ttatagatttcttaacc 21809805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 17506239 - 17506386
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagcaccaaatgaaataagtttt--tattaaaaagtaatgtaattattatttca-aagaagtgacagtt 116  Q
    |||||||||  ||||||||  || |||||||| |||||||| ||| ||| ||||  |||||||||||||||||||||||| || | || |||||||||||    
T  17506239 aatgttaaccggtgcctctcgggcattggttaggcaccaaaagaagtaattttttttattaaaaagtaatgtaattattacttgataaaaagtgacagtt 17506338  T
Q  117 tatattttcaagacagaaaattctatttatagagtccttaaccggtgcc 165  Q
    ||||||| ||| | |  ||||| |||||||||| | ||||||| |||||    
T  17506339 tatatttccaaaata-taaattatatttatagatttcttaaccagtgcc 17506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 4803157 - 4803275
Alignment:
Q  47 ggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt--caaagaagtgacagtttatattttcaagacagaaaattctattt 144  Q
    |||||||||||||| ||| ||| |||||| ||||||||||||||||||||| ||   ||| ||||  ||||||||||||  || |||| |||||||||||    
T  4803157 ggttaagcaccaaaagaagtaaatttttactaaaaagtaatgtaattattacttgataaaaaagtagcagtttatatttcaaacacag-aaattctattt 4803255  T
Q  145 atagagtccttaaccggtgc 164  Q
    ||||| || |||| ||||||    
T  4803256 atagattctttaatcggtgc 4803275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 10252931 - 10253054
Alignment:
Q  12 ttttcgaa-aatgttaactagtgcctctgaggtattggttaagc-accaaatgaaataagtttttattaaaaagtaatgtaattattatt---tcaaaga 106  Q
    |||||||| |||||||||  ||| ||| |||||||||||||||| |||||| ||| |||| |||||||||||| | ||||||| |||| |   ||||  |    
T  10252931 ttttcgaagaatgttaaccggtgtctccgaggtattggttaagcaaccaaaagaagtaagattttattaaaaaatgatgtaataattagttagtcaa--a 10253028  T
Q  107 agtgacagtttatattttcaagacag 132  Q
    | | ||||||||||||||||||||||    
T  10253029 aataacagtttatattttcaagacag 10253054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 10008191 - 10008245
Alignment:
Q  44 attggttaagca-ccaaatgaaataagtttttattaaaaagtaatgtaattatta 97  Q
    |||||||||||| ||||| ||| |||||||||||||||||||  |||||||||||    
T  10008191 attggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattatta 10008245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 19418569 - 19418647
Alignment:
Q  20 aatgttaactagtgcctctgaggtattggttaagca-ccaaatgaaataagtttttattaaaaagtaatgtaattatta 97  Q
    ||||||||||||||  |  | ||||||||||||||| ||||| ||| |||| |||||||||||||| ||||||| ||||    
T  19418569 aatgttaactagtgttttcggggtattggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

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Target: scaffold0068 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 52010 - 52131
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaaaaagtaatgtaattattattt-caaagaagtgacagtttatattttcaagacagaaaattcta 141  Q
    |||||||||| | | |||| || |||||||||||||||||||||||||||||||||||   || || ||||| |||||||||  |||||| | |||||||    
T  52010 tattggttaaacgctaaataaagtaagtttttattaaaaagtaatgtaattattatttggtaaaaaatgacaatttatatttctaagaca-acaattcta 52108  T
Q  142 tttatagagtccttaaccggtgc 164  Q
    |||||||| | ||||||| ||||    
T  52109 tttatagatttcttaacccgtgc 52131  T

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Target: scaffold1372 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 1322 - 1263
Alignment:
Q  106 aagtgacagtttatattttcaagacagaaaattctatttatagagtccttaaccggtgccc 166  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||    
T  1322 aagtgacagtttatatttccaagacag-aaattctatttatagattccttaacccgtgccc 1263  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 202163 - 202199
Alignment:
Q  43 tattggttaagcaccaaatgaaataagtttttattaa 79  Q
    |||||||||||||||||||||||||| ||||||||||    
T  202163 tattggttaagcaccaaatgaaataaatttttattaa 202199  T

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