View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_12 (Length: 596)
Name: NF16533_low_12
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 3777934 - 3777657
Alignment:
| Q |
23 |
cagactcaaatcgtaagccacgcttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataa |
122 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
3777934 |
cagactcaaatcctaagccacatttcaaccggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataa |
3777835 |
T |
|
| Q |
123 |
cttggccattgttttccgaacaaagaatgaatgctattttgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaag |
222 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3777834 |
cttggccattgttttcagagcaaagaatgaatgctatgttgttagagggactcggagttggtttgaaggtaagatttaatgagattggcatagctgaaag |
3777735 |
T |
|
| Q |
223 |
agatgaaattgctaaggtgattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaagatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3777734 |
agatgaaattgctaaggtgattagagatctaatgataggtgaagaacgaagtgagattcgacaaagaattgaagatct |
3777657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 3701183 - 3701438
Alignment:
| Q |
45 |
cttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaaca |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||| ||||||| |||||||| ||| ||| || |
|
|
| T |
3701183 |
cttcaaccggtggatttttaacacattgtggttggaattcgacacttgagagtatcgtgttaggagtgccaatgataacatggccattatttggcgagca |
3701282 |
T |
|
| Q |
145 |
aagaatgaatgctattttgct---agagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtg |
241 |
Q |
| |
|
||||||||||||| ||||| | |||||||||| ||| ||||||||| | | |||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
3701283 |
aagaatgaatgctgttttgttgacagagggactcaaagtgggtttgaagatcaaatttaatgagaatggcattgcagaaagagtggaaattgctaaggtg |
3701382 |
T |
|
| Q |
242 |
attagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
297 |
Q |
| |
|
||| |||||||||| | || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3701383 |
gttaaagatctaatgctcggagaagaacgaagtgagattcgacaaagaattgaaga |
3701438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 46 - 297
Target Start/End: Original strand, 3707951 - 3708205
Alignment:
| Q |
46 |
ttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaacaa |
145 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
3707951 |
ttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatcaa |
3708050 |
T |
|
| Q |
146 |
agaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtga |
242 |
Q |
| |
|
| |||||||||||||| | |||||||||| ||| ||||||||| ||| |||||||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
3708051 |
ataatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggcattgcagaaagagaggaaattgctaaggtgg |
3708150 |
T |
|
| Q |
243 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
297 |
Q |
| |
|
||||| |||||||| | || |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
3708151 |
ttagacatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3708205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 3719459 - 3719714
Alignment:
| Q |
45 |
cttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaaca |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||||||| || || |
|
|
| T |
3719459 |
cttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtgatca |
3719558 |
T |
|
| Q |
145 |
aagaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtg |
241 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||| ||||||||| ||| ||||||||||||||| || || |||||||| ||||||||||||||| |
|
|
| T |
3719559 |
aagaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggaattgcagaaagagaggaaattgctaaggtg |
3719658 |
T |
|
| Q |
242 |
attagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
297 |
Q |
| |
|
||| ||||||||| | || ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3719659 |
gttaaggatctaatgctcggagaaaaacggagtgagattcgacaaagaatggaaga |
3719714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 429 - 579
Target Start/End: Complemental strand, 3769760 - 3769607
Alignment:
| Q |
429 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgtttcattatcattgttataaaattgtacaataacattagtttgata |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3769760 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttggtttgttttattataattattataaaattgtacaataacattagtttgata |
3769661 |
T |
|
| Q |
529 |
tgaaactgaa---tatgatgtatgtgaaactacattttaaagtgagatatgttc |
579 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3769660 |
tgaaattgaatattatgatgtatgtgaaactacattttaaagtgagatatgttc |
3769607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 46 - 297
Target Start/End: Complemental strand, 3770244 - 3769990
Alignment:
| Q |
46 |
ttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtgataacttggccattgttttccgaacaa |
145 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||||||||||| || ||| |
|
|
| T |
3770244 |
ttcaacaggtggatttttaacacattgtggttggaattcaacacttgagagtattgtgtcgggagtgccaatggtaacttggccattgtttggtgatcaa |
3770145 |
T |
|
| Q |
146 |
agaatgaatgctattt---tgctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagctgaaagagatgaaattgctaaggtga |
242 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||| ||||||||| ||| |||||||||||||| ||| || |||||||| ||||||||||||||| |
|
|
| T |
3770144 |
agaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatgacattgcagaaagagaggaaattgctaaggtgg |
3770045 |
T |
|
| Q |
243 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
297 |
Q |
| |
|
||| |||||||||| | || |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
3770044 |
ttaaagatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3769990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 33005182 - 33004902
Alignment:
| Q |
20 |
ccacagactcaaatcgtaagccacgcttcaaccggtggatttttaacacattgtggttggaattagacacttgagagtcttgtgttcggagtgccagtga |
119 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||| || ||||||||| ||| |
|
|
| T |
33005182 |
ccacagactcaaatcctaagccacacttcaactggtggatttttaacacattgtggttggaattcaacactcgagagcattgcgtcgggagtgccaatga |
33005083 |
T |
|
| Q |
120 |
taacttggccattgttttccgaacaaagaatgaatgctattttg---ctagagggactcggagttggtttgaaggtaagatttaatgagaatggcatagc |
216 |
Q |
| |
|
|||||||||| |||||| ||| |||||| |||||||||||||| ||||||||||| || ||||||||||||| | ||||||||| |||||| || |
|
|
| T |
33005082 |
taacttggccgttgtttggcgagcaaagattgaatgctattttgttaatagagggactcaaggtgggtttgaaggtaa-aattaatgagagtggcattgc |
33004984 |
T |
|
| Q |
217 |
tgaaaga-gatgaaattgctaaggtgattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
297 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| ||||| | ||||||||| | ||||| ||| ||||||||| ||||| |
|
|
| T |
33004983 |
agaaagaggaggaaattgctaaggtgattagagatttaatgcttggtgaagaaaggagtgaaattgaacaaagaattgaaga |
33004902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 491
Target Start/End: Complemental strand, 3777536 - 3777442
Alignment:
| Q |
400 |
ctgtgagtttatttcaatgtgtttaatac---ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgtttcattat |
491 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||| ||||| | ||||| || | |||||||||| |||||| ||||||| ||||| |
|
|
| T |
3777536 |
ctgtgagtttatttcaatgtgtttattacattttttttcttccttaatgttgatgttgcaccacaatgatacttgaagttggtttgttttattat |
3777442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University