View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_123 (Length: 240)
Name: NF16533_low_123
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_123 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34472930 - 34472707
Alignment:
| Q |
1 |
aatttctactagacaacaatgttatcaataaggatgaaatataaaggcggaaatgcactggacatataagttggtttaacaatcacaggcagaattgtca |
100 |
Q |
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| T |
34472930 |
aatttctactagacaacaatgttatcaataaggatgaaatataaagggggaaatgcactggacatataagttggtttaacaatcataggcagaattgtca |
34472831 |
T |
|
| Q |
101 |
aaatataaataacttgataaatatttctagaggaagatgatgaggattttcaaatcctctatcttttgttgttcagttaatagaaccaattcttgattca |
200 |
Q |
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| T |
34472830 |
aaatataaataacttgataaatatttctagaggaagatgatgaggactttcaaatcctctatcttttgttgttcagtaaatagaaccaattcttgattca |
34472731 |
T |
|
| Q |
201 |
tatataactctcttctctgattac |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
34472730 |
catataactctcttctctgattac |
34472707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 26391137 - 26391069
Alignment:
| Q |
93 |
aattgtcaaaatataaataacttgataaatatttctagaggaagatgatgaggattttcaaatcctctat |
162 |
Q |
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| T |
26391137 |
aattgtgaaaatataaataacttggtagatatttctagtggaaaatgatca-gagattcaaatcctctat |
26391069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 21023515 - 21023583
Alignment:
| Q |
93 |
aattgtcaaaatataaataacttgataaatatttctagaggaagatgatgaggattttcaaatcctctat |
162 |
Q |
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|||||| ||||||||||||||||| || |||||||||| |||| ||||| | | | |||||||||||||| |
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| T |
21023515 |
aattgttaaaatataaataacttggtagatatttctagtggaaaatgatcatg-tattcaaatcctctat |
21023583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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