View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_124 (Length: 240)

Name: NF16533_low_124
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_124
NF16533_low_124
[»] chr2 (3 HSPs)
chr2 (1-225)||(5079630-5079854)
chr2 (21-217)||(5102447-5102643)
chr2 (21-217)||(5120072-5120268)
[»] chr3 (1 HSPs)
chr3 (5-196)||(16886729-16886920)
[»] chr6 (1 HSPs)
chr6 (21-216)||(14411857-14412052)
[»] chr8 (16 HSPs)
chr8 (10-196)||(24875513-24875699)
chr8 (10-196)||(24913164-24913350)
chr8 (10-196)||(25340781-25340967)
chr8 (10-165)||(25714975-25715130)
chr8 (90-196)||(25475137-25475243)
chr8 (10-196)||(25685429-25685615)
chr8 (10-196)||(25800068-25800254)
chr8 (52-165)||(22901263-22901376)
chr8 (10-165)||(25322438-25322593)
chr8 (90-196)||(25452853-25452959)
chr8 (92-196)||(23257800-23257904)
chr8 (10-165)||(25569688-25569843)
chr8 (90-165)||(25604499-25604574)
chr8 (122-196)||(25490094-25490168)
chr8 (90-165)||(25695222-25695297)
chr8 (10-196)||(25646824-25647010)
[»] chr4 (1 HSPs)
chr4 (52-196)||(10323691-10323835)
[»] scaffold0070 (1 HSPs)
scaffold0070 (10-196)||(17151-17337)
[»] scaffold0830 (1 HSPs)
scaffold0830 (90-196)||(4601-4707)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5079630 - 5079854
Alignment:
Q  1 atgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079630 atgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttca 5079729  T
Q  101 tctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079730 tctgttggcttctttcctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatat 5079829  T
Q  201 ttcaacattaatcactatttagtaa 225  Q
    |||||||||||||||||||||||||    
T  5079830 ttcaacattaatcactatttagtaa 5079854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 5102643 - 5102447
Alignment:
Q  21 aatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgt 120  Q
    |||||||||||||||||   |||||    ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | ||    
T  5102643 aatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaattcttctgaaaacatttcatttgttggcatctttccggt 5102544  T
Q  121 gaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatatttcaacattaatcacta 217  Q
    ||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| | |||  |||||||||||||| ||| | ||||||||||||||    
T  5102543 gaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgattccgctagatccatactctgtatatgaacattaatcacta 5102447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 5120268 - 5120072
Alignment:
Q  21 aatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgt 120  Q
    |||||||||||||||||   |||||    ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||    
T  5120268 aatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaattcttctgaaaacatttcatttgttggcttctttccggt 5120169  T
Q  121 gaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatatttcaacattaatcacta 217  Q
    ||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |  ||| |||||||||||||| ||| |  ||| |||||||||    
T  5120168 gaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgatccccctagatccatactctgtatatggacaataatcacta 5120072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 16886920 - 16886729
Alignment:
Q  5 tgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctg 104  Q
    ||||||||||| ||  |||||||||||||||||||||||||  | ||||| ||||||||||| ||||| ||||||||||||| | |||||||||||| ||    
T  16886920 tgtgagactaaattgtaatccacaacttccataactgaattaggcattgactcactaatccatgtttttaaggttaattcttgtacaaacatttcatttg 16886821  T
Q  105 ttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||||||||||| |||||||||||||||||||||||| |||| | || ||||||||||||||||  ||||| |||||||||||||||||||||    
T  16886820 ttggcttctttcctgtgaagatttccattagcattactccataactgtacacatctcctttaatagaaatgactcccttagatccatactct 16886729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 14411857 - 14412052
Alignment:
Q  21 aatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgt 120  Q
    |||||||||||||||||   ||||||   || ||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| | ||    
T  14411857 aatccacaacttccatactcgaattggccatcgattcgctaatccaagttttcaaagttaattcttctgaaaacatttcatttgttggcttctttccggt 14411956  T
Q  121 gaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatatttcaacattaatcact 216  Q
    ||| | ||||||||||||||| ||| |||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||| |  ||||||||||||    
T  14411957 gaacagttccattagcattatcccatagctgtacacatctcctttaacagaaatgactcctttagatccatactctgtatatacacattaatcact 14412052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 24875699 - 24875513
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  24875699 gactaaatttgaatccatgacctccataattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 24875600  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
     | |||  ||||||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  24875599 ctttttcttgtgaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactct 24875513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 24913350 - 24913164
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  24913350 gactaaatttgaatccatgacctccataattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 24913251  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
     |  ||  ||||||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | |||||||||||||||||||    
T  24913250 attattcttgtgaagatttccattagcataatcccatagctgtacacatctcctttcacagaaacaattcccttagatccatactct 24913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25340781 - 25340967
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||  |  ||||||| ||||||||||||    
T  25340781 gactaaatttgaatccaagacctccataattgaattaggaaatgatccactgatccatgtcttcaagtttagttcagcaacaaacatatcatctgttggc 25340880  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  ||||||||||||||||| ||| || ||| |||| |||||||||||||| || ||||  | |||||||||||||||||||    
T  25340881 tttcttcttgtgaagatttccattaacatgatcccatagctgtacacatctcctttgacagaaacaattcccttagatccatactct 25340967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 25714975 - 25715130
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||||||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25714975 gactaaatttgaatccatgacctccataattgaattaggcaatgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25715074  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    || |||  ||| ||||||||||||||||| || ||| |||| ||||| ||||||||    
T  25715075 ttttttcttgttaagatttccattagcataatcccatagctgtacacgtctccttt 25715130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 25475137 - 25475243
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatcc 189  Q
    ||||||| |||||||||||||| |||  ||| ||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| ||||||||    
T  25475137 caaacatatcatctgttggcttttttcttgttaagatttccattagcataatcccatagctgtacacatctcctttcacagaaacaattcctttagatcc 25475236  T
Q  190 atactct 196  Q
    |||||||    
T  25475237 atactct 25475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25685429 - 25685615
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| || | ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25685429 gactaaatttgaatccaggacctccataattgaattaggcaatgatccaatgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25685528  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  |||||| |||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  25685529 tttcttcttgtgaaaatttccattagcataatcccatagctgtacacatctcctttgaccgaaacaattcctttagatccatactct 25685615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25800068 - 25800254
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||| | ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25800068 gactaaatttgaatccatgacctccatgattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25800167  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  ||||||||||||||||| ||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  25800168 tttcttcttgtgaagatttccattaacatgatcccatagctgtacacatctcctttgacggaaacaattcctttagatccatactct 25800254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 22901376 - 22901263
Alignment:
Q  52 tgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagcta 151  Q
    ||||||||| ||||| || ||||| ||||  |||||| ||||||| ||||||||||||||  ||  ||| ||||||||||||||||| || ||| ||||     
T  22901376 tgattcactgatccatgtcttcaaagttaggtcttctacaaacatatcatctgttggctttcttcttgtaaagatttccattagcataatcccatagctg 22901277  T
Q  152 tacacatctccttt 165  Q
    || |||||||||||    
T  22901276 tatacatctccttt 22901263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 25322438 - 25322593
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || |||||||  |||||  | | ||||| ||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25322438 gactaaatttgaatccatgacctccataatggaattaggcaatgattgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25322537  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||  ||  ||||||||||||||||| |||||| ||| |||| ||||| ||||||||    
T  25322538 tttcttcttgtgaagatttccattatcattatcccatagctgtacacgtctccttt 25322593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 25452853 - 25452959
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatcc 189  Q
    ||||||| ||||||||||||||  ||  ||| ||||||||||||| ||| || ||| |||| |||||||||||||| || ||||  | ||| ||||||||    
T  25452853 caaacatatcatctgttggctttcttcttgtaaagatttccattaacatgatcccatagctgtacacatctcctttgacggaaacaattcctttagatcc 25452952  T
Q  190 atactct 196  Q
    |||||||    
T  25452953 atactct 25452959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 23257800 - 23257904
Alignment:
Q  92 aacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccat 191  Q
    ||||| ||||||||||||||  |   ||||||||||||||||||||| || ||| |||| || ||||||||||| || |||||   |||||| |||||||    
T  23257800 aacatatcatctgttggctttctccttgtgaagatttccattagcataatcccatagctgtatacatctcctttgacagaaatagttccctttgatccat 23257899  T
Q  192 actct 196  Q
    |||||    
T  23257900 actct 23257904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 25569688 - 25569843
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||||||| ||||| || |||||  ||| |||| |  |||| || ||||||||||||    
T  25569688 gactaaatttgaatccaagacctccataattgaatttggcaatgattcactgatccatgtcttcaaacttagttctgcaacaaatatatcatctgttggc 25569787  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||  ||  ||||||||||||||||||||| || ||| |||| || | |||||||||    
T  25569788 tttcttcttgtgaagatttccattagcataatcccatagctgtaaatatctccttt 25569843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 25604499 - 25604574
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||||||| |||||| |||||||  | | ||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25604499 caaacatatcatctattggctttctctttgtaaagatttccattagcataattccatagctgtacacatctccttt 25604574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 25490094 - 25490168
Alignment:
Q  122 aagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  25490094 aagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactct 25490168  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 25695222 - 25695297
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||||||| ||||||||||||||  ||  ||||||||||||||||||||| || ||| ||||  |||| ||||||||    
T  25695222 caaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagctgaacacgtctccttt 25695297  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25646824 - 25647010
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||  ||| ||||| || |||||| ||| |||| |  ||||||| |||||| |||||    
T  25646824 gactaaatttgaatccatgacctccataattgaattaggcaatgatctactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggc 25646923  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  |   ||| ||||||||||||||||| || ||| || | |||||||||||||| || ||||  | ||| || ||||||||||||    
T  25646924 tttctccttgtaaagatttccattagcataatcccatagttgtacacatctcctttcacagaaacaattcctttcgatccatactct 25647010  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 10323691 - 10323835
Alignment:
Q  52 tgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagcta 151  Q
    |||| |||| ||||| || |||||| ||| |||| | |||||||| ||||||||||||||  ||  ||||||||||||||||||||| || ||| ||||     
T  10323691 tgatccactgatccatgtcttcaagcttagttctgcagcaaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagctg 10323790  T
Q  152 tacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||||| |||||||| || ||||  | ||| |||||||||||||||    
T  10323791 tacacgtctcctttgacagaaacaattcctttagatccatactct 10323835  T

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Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 17337 - 17151
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  |  ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  17337 gactaaatttgaatccaagagctccataattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 17238  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  ||| ||||||||||||||||| || ||| |||| ||||| |||||||| || ||||  | |||||||||||||||||||    
T  17237 tttcttcttgtaaagatttccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactct 17151  T

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Target: scaffold0830 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 4707 - 4601
Alignment:
Q  90 caaacatttcatctgttggcttcttttctg-tgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatc 188  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||    
T  4707 caaacatatcatctgttggctt-tcttctggtgaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatc 4609  T
Q  189 catactct 196  Q
    ||||||||    
T  4608 catactct 4601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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