View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_126 (Length: 238)
Name: NF16533_low_126
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_126 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45155729 - 45155951
Alignment:
| Q |
1 |
tctcaataaacattcattccatgattgagtcaaaaactaaatgcaaaattaacatatacctggaagggaagaagtatatccagcagtccaaatttccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45155729 |
tctcaataaacattcattccatgattgagtcaaaaactaaatgcaaaattaacatatacctggaagggaagaagtatatctagcagtccaaatttccata |
45155828 |
T |
|
| Q |
101 |
ataaccgcagagaagcttcaccagaaccataagctagcatataatttatttccatcaggagccttccctgaaaagataatagaaaaataattcatccagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45155829 |
ataaccgcagagaagcttcaccagaaccataagctagcatataatttatttccatcaggagccttccctgaaaagataatagaaaaataattcatccagg |
45155928 |
T |
|
| Q |
201 |
acatta-cattatagtatcattt |
222 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
45155929 |
acattagcattatagtatcattt |
45155951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 40294650 - 40294762
Alignment:
| Q |
57 |
tacctggaagggaagaagtatatccagcagtccaaatttccataataaccgcagagaagcttcaccagaaccataagctagcatataatttatttccatc |
156 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||||||||||||||||| || || |||||| |||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
40294650 |
tacctgaaagggaagaagaatatctagaagtccaaatttccataatagcctcaaagaagcctcaccagatccatatgctagcatataattcatttccatc |
40294749 |
T |
|
| Q |
157 |
aggagccttccct |
169 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
40294750 |
aggagcctaccct |
40294762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University