View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_13 (Length: 578)

Name: NF16533_low_13
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_13
NF16533_low_13
[»] chr4 (17 HSPs)
chr4 (71-572)||(26646632-26647134)
chr4 (71-279)||(22187941-22188155)
chr4 (71-198)||(13683383-13683511)
chr4 (190-303)||(13682888-13683001)
chr4 (71-160)||(26646341-26646430)
chr4 (307-481)||(13682689-13682857)
chr4 (304-484)||(13689257-13689428)
chr4 (393-481)||(13669832-13669920)
chr4 (110-204)||(13689704-13689799)
chr4 (71-140)||(33078057-33078126)
chr4 (304-470)||(22188207-22188367)
chr4 (173-242)||(33077994-33078063)
chr4 (236-292)||(13689467-13689523)
chr4 (447-484)||(13687305-13687342)
chr4 (18-49)||(26646579-26646610)
chr4 (498-540)||(13669772-13669814)
chr4 (498-540)||(13682629-13682671)
[»] chr8 (5 HSPs)
chr8 (71-303)||(36991734-36991969)
chr8 (165-303)||(37001549-37001686)
chr8 (305-484)||(36991998-36992171)
chr8 (305-484)||(37001715-37001888)
chr8 (98-170)||(36996909-36996982)
[»] chr7 (1 HSPs)
chr7 (110-303)||(8596620-8596820)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 71 - 572
Target Start/End: Original strand, 26646632 - 26647134
Alignment:
Q  71 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatcacacttttactattaactaattttttaaattaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646632 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctaacaacactattgtatcacacttttactattaactaattttttaaattaaa 26646731  T
Q  171 caatcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttccagaat 270  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  26646732 caatcacacgaatacttaatataaagaaacaagactcaggtcaataaataagtcatatatggtacctgaatagatagtcaagaacaaatatttccagaat 26646831  T
Q  271 catgcaaccaaactgtgtgacaatgctttcatatataggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaagcaccaac 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26646832 catgcaaccaaactgtgtgacaatgctttcatatataggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaaccaccaac 26646931  T
Q  371 tcaaaccaatgttcctgaaatatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatg 470  Q
    ||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26646932 tcaaaacaatctttctcaattatgacaaacttatccgtagtattgttagcctttattgattcataaccatcgcataatatctccattagcaaaggagatg 26647031  T
Q  471 tcacaacaccatct-nnnnnnnttgatgcaccaaggcttccttaattacatcttccttttcccaaatcattctgttcattgaacttgtgccactttcttt 569  Q
    ||||||||||||||        || |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  26647032 tcacaacaccatctataaaaaattcatgcaccaaggcttccttaattacatcttccttttcccgaatcattatgttcgttgaacttttgccactttcttt 26647131  T
Q  570 cat 572  Q
    |||    
T  26647132 cat 26647134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 71 - 279
Target Start/End: Original strand, 22187941 - 22188155
Alignment:
Q  71 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatcacac-ttttactattaactaattttttaaattaa 169  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| |    
T  22187941 tagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactattgtatcacactttttattattaactagtttttaaaattga 22188040  T
Q  170 acaatcacaccaatacttaatataaagaaacaaga-ctcaggtcaataaataaatc----atatatggtatctgaatagatagtcaagaacaaatatttc 264  Q
    ||||||| |  ||||||||||||||| | |||||| | || |||| ||||||||||    |||||||||| |||||||||||||||||||||||||||||    
T  22188041 acaatcatatgaatacttaatataaaaatacaagatcccatgtcattaaataaatcatatatatatggtacctgaatagatagtcaagaacaaatatttc 22188140  T
Q  265 cagaatcatgcaacc 279  Q
    || ||||||||||||    
T  22188141 cacaatcatgcaacc 22188155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 13683511 - 13683383
Alignment:
Q  71 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatcacac-ttttactattaactaattttttaaattaa 169  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13683511 tagaatatgatcagcctgcacagtctactgggtatcaagccaaaagcctagcaacactattgtatcacactttttattattaactaattttttaaattaa 13683412  T
Q  170 acaatcacaccaatacttaatataaagaa 198  Q
    ||||||| |  ||||||||||||||||||    
T  13683411 acaatcatataaatacttaatataaagaa 13683383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 13683001 - 13682888
Alignment:
Q  190 tataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtg 289  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  13683001 tataaagaaacaagacccaggtcaataaataaatcatatatgatacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtg 13682902  T
Q  290 acaatgctttcata 303  Q
    ||| | ||||||||    
T  13682901 acatttctttcata 13682888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 26646341 - 26646430
Alignment:
Q  71 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatcacacttttactattaactaatttt 160  Q
    |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  26646341 tagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactaatgtatcacacttttattattaactaatttt 26646430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 481
Target Start/End: Complemental strand, 13682857 - 13682689
Alignment:
Q  307 aggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttatcc 406  Q
    ||||||||||||| || ||||||| || |||| ||||||||| |||||| ||      ||||||||||||| || |||||  | | ||||||||||| ||    
T  13682857 aggtttatactctataccaacaacgctattaaatagggatggaacatcacca------accaactcaaacctattttccttgattctgacaaacttagcc 13682764  T
Q  407 gtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacacca 481  Q
    |||| ||||||||| | |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13682763 gtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacacca 13682689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 304 - 484
Target Start/End: Complemental strand, 13689428 - 13689257
Alignment:
Q  304 tataggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaactta 403  Q
    |||||||||||||||| || ||||||| || |||| ||||||||| |||||| ||      ||||||||||||| || |||||  | | |||||||||||    
T  13689428 tataggtttatactctataccaacaacgctattaaatagggatggaacatcacca------accaactcaaacctattttccttgattctgacaaactta 13689335  T
Q  404 tccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatct 484  Q
     |||||| ||||||||| | |||||||| | |||||| |||||   | |||||||||||||||||||||||||||||||||    
T  13689334 gccgtagcattgttagcatctattgatttacaaccattgtata---tgtccattagcaaaggagatgtcacaacaccatct 13689257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 393 - 481
Target Start/End: Complemental strand, 13669920 - 13669832
Alignment:
Q  393 tgacaaacttatccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacacca 481  Q
    ||||||||||| |||||| ||||||||| | |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13669920 tgacaaacttagccgtagcattgttagcatctattgatttacaaccattgtataatatgtccattagcaaaggagatgtcacaacacca 13669832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 13689799 - 13689704
Alignment:
Q  110 ccaaaagcctagcaacactattgtatcacac-ttttactattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaaga 204  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |   |||||||||||||| | ||||||    
T  13689799 ccaaaagcctagcaacactattgtatcacactttttattattaactaattttttaaattaagcaatcatatatatacttaatataaaaatacaaga 13689704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 33078126 - 33078057
Alignment:
Q  71 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatcacac 140  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  33078126 tagaatatgatcagcctgcacagtctactagataacaagccaaaagcctagcaacactattgcatcacac 33078057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 470
Target Start/End: Original strand, 22188207 - 22188367
Alignment:
Q  304 tataggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaactta 403  Q
    |||||||| ||||||| || ||||||  || |||| ||||||||| |||||| ||      |||||| |||||| || ||||| || | | |||| ||||    
T  22188207 tataggttgatactctgtaccaacaatgctattaaatagggatggaacatcacca------accaacccaaacctattttcctcaattctaacaacctta 22188300  T
Q  404 tccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatg 470  Q
      ||||||||||||||| |||||||||| |||||||| ||||||||| ||||||| |||||||||||    
T  22188301 gacgtagtattgttagcatttattgattgataaccattgtataatatgtccattatcaaaggagatg 22188367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 33078063 - 33077994
Alignment:
Q  173 atcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaata 242  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||||||| || ||||||| |||||||    
T  33078063 atcacacgaatacttaatataaagaaacaagatccaggtcaataaataaatgatgtatggtacctgaata 33077994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 13689523 - 13689467
Alignment:
Q  236 ctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgaca 292  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  13689523 ctgaatacatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgaca 13689467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 484
Target Start/End: Complemental strand, 13687342 - 13687305
Alignment:
Q  447 atatctccattagcaaaggagatgtcacaacaccatct 484  Q
    |||| |||||||||||||||||||||||||||||||||    
T  13687342 atatgtccattagcaaaggagatgtcacaacaccatct 13687305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 26646579 - 26646610
Alignment:
Q  18 actttgagtaaagttcttctccatttttcttc 49  Q
    ||||||||||||||||||||||||||||||||    
T  26646579 actttgagtaaagttcttctccatttttcttc 26646610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 13669814 - 13669772
Alignment:
Q  498 caccaaggcttccttaattacatcttccttttcccaaatcatt 540  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  13669814 caccaaggcttccttaattacatcttcttcttcccaaaacatt 13669772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 13682671 - 13682629
Alignment:
Q  498 caccaaggcttccttaattacatcttccttttcccaaatcatt 540  Q
    ||||||||||||||||||||||||||| | |||||||| ||||    
T  13682671 caccaaggcttccttaattacatcttcttcttcccaaaacatt 13682629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 36991734 - 36991969
Alignment:
Q  71 tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatcacactttt-actattaactaattttttaaattaa 169  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| |||||  | |||||||    
T  36991734 tagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactgttgcatcacactttttattattaagtaattcataaaattaa 36991833  T
Q  170 acaatcacaccaatacttaatataaagaa-acaaga-ctcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttccag 267  Q
    |||||||||| ||||||||||||||| || |||||| | ||  ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  36991834 acaatcacacgaatacttaatataaaaaatacaagatcccatttcattaaataaatcatatatggtacctgaatagatagtcaagaacaaatatttccac 36991933  T
Q  268 aatcatgcaaccaaactgtgtgacaatgctttcata 303  Q
    |||| ||||||| |||| ||||||||||||||||||    
T  36991934 aatcctgcaacccaactctgtgacaatgctttcata 36991969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 37001549 - 37001686
Alignment:
Q  165 attaaacaatcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttc 264  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  37001549 attaaacaatcacacgaatacttaatataaagaaacaagac-caggtcaataaatatatcataaatggtacctgaatagatagtcaagaacaaatatttc 37001647  T
Q  265 cagaatcatgcaaccaaactgtgtgacaatgctttcata 303  Q
    || |||| ||||||| |||| ||||||||||||||||||    
T  37001648 cacaatcctgcaacccaactctgtgacaatgctttcata 37001686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 305 - 484
Target Start/End: Original strand, 36991998 - 36992171
Alignment:
Q  305 ataggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttat 404  Q
    |||||||||||| || || |||||||  | |||| ||||||||| |||||| ||      |||||| |||||| || || || || | |||||||||||     
T  36991998 ataggtttataccctataccaacaacgatattaattagggatggaacatcacca------accaacccaaacctatttttctcaattctgacaaacttag 36992091  T
Q  405 ccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatct 484  Q
    |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  36992092 ccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatct 36992171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 305 - 484
Target Start/End: Original strand, 37001715 - 37001888
Alignment:
Q  305 ataggtttatactctttatcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttat 404  Q
    |||||||||||| || || |||||||  | |||| ||||||||| |||||| ||      |||||| |||||| || || || || | |||||||||||     
T  37001715 ataggtttataccctataccaacaacgatattaattagggatggaacatcacca------accaacccaaacctatttttctcaattctgacaaacttag 37001808  T
Q  405 ccgtagtattgttagcctttattgattcataaccatcgtataatatctccattagcaaaggagatgtcacaacaccatct 484  Q
    |||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  37001809 ccgtagtattgtcagcatttattgattgataaccattgtataatatctccattagcaaaggagatgtcacagcaccatct 37001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 36996909 - 36996982
Alignment:
Q  98 ctggatatcaagccaaaagcctagcaacactattgtatcacac-ttttactattaactaattttttaaattaaa 170  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||| |||| ||||||||    
T  36996909 ctggatatcaagcaaaaagcctaccgacactattgtatcacactttttattattaactaaattttgaaattaaa 36996982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 110 - 303
Target Start/End: Original strand, 8596620 - 8596820
Alignment:
Q  110 ccaaaagcctagcaacactattgtatcacactttt-actattaactaattttttaaatt-aaacaatcacaccaatacttaatataaagaaacaagactc 207  Q
    ||||||||||||||||||| ||||||||||||||| | ||| ||||||||||| ||||| ||||||||| |  ||||||||||||||| | ||||||  |    
T  8596620 ccaaaagcctagcaacactgttgtatcacactttttattataaactaatttttaaaatttaaacaatcatatgaatacttaatataaaaatacaagatcc 8596719  T
Q  208 aggt-caataaataaatcatatatggtatctgaatag----atagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcat 302  Q
     | | || |||||||||||||||||||| ||||||||    ||||||||||||||||||||||| |||||||||||| |||| |||| || |||||||||    
T  8596720 tgtttcattaaataaatcatatatggtacctgaatagatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtggcattgctttcat 8596819  T
Q  303 a 303  Q
    |    
T  8596820 a 8596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University