View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_136 (Length: 230)

Name: NF16533_low_136
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_136
NF16533_low_136
[»] chr6 (9 HSPs)
chr6 (8-131)||(13761923-13762047)
chr6 (129-171)||(30341421-30341463)
chr6 (130-171)||(15990103-15990144)
chr6 (132-171)||(15508085-15508124)
chr6 (129-174)||(31110817-31110862)
chr6 (132-171)||(4231548-4231587)
chr6 (127-169)||(6209528-6209570)
chr6 (187-224)||(11427673-11427710)
chr6 (137-174)||(22880716-22880753)
[»] chr7 (13 HSPs)
chr7 (123-171)||(38044188-38044236)
chr7 (131-171)||(22343360-22343400)
chr7 (131-171)||(41915740-41915780)
chr7 (130-224)||(8080391-8080485)
chr7 (129-170)||(7727903-7727944)
chr7 (129-173)||(38837214-38837258)
chr7 (132-174)||(8238212-8238255)
chr7 (132-171)||(40846174-40846213)
chr7 (130-224)||(7389387-7389481)
chr7 (187-224)||(3784050-3784087)
chr7 (129-174)||(11044185-11044230)
chr7 (129-170)||(18207177-18207218)
chr7 (187-224)||(19329897-19329934)
[»] chr8 (9 HSPs)
chr8 (129-171)||(16383374-16383416)
chr8 (132-174)||(30479532-30479574)
chr8 (130-171)||(34307214-34307255)
chr8 (129-168)||(24307626-24307665)
chr8 (130-168)||(24307857-24307895)
chr8 (131-173)||(32032724-32032766)
chr8 (122-224)||(37038469-37038571)
chr8 (132-174)||(15048239-15048281)
chr8 (130-174)||(4854921-4854965)
[»] chr5 (15 HSPs)
chr5 (129-171)||(3921326-3921368)
chr5 (130-224)||(36732950-36733044)
chr5 (131-224)||(2740273-2740366)
chr5 (131-171)||(2252229-2252269)
chr5 (132-224)||(14831814-14831906)
chr5 (132-224)||(40145407-40145499)
chr5 (137-224)||(18520892-18520979)
chr5 (127-174)||(28177770-28177817)
chr5 (132-174)||(26720516-26720558)
chr5 (132-174)||(26990265-26990307)
chr5 (130-168)||(39688961-39688999)
chr5 (132-174)||(42414360-42414402)
chr5 (187-224)||(31009043-31009080)
chr5 (137-174)||(36875661-36875698)
chr5 (132-168)||(35943956-35943992)
[»] chr4 (17 HSPs)
chr4 (129-171)||(19670777-19670819)
chr4 (130-174)||(55475189-55475233)
chr4 (131-173)||(44536804-44536846)
chr4 (132-170)||(55079776-55079814)
chr4 (115-168)||(29548023-29548076)
chr4 (130-171)||(32766956-32766997)
chr4 (131-168)||(47986207-47986244)
chr4 (132-224)||(6034044-6034136)
chr4 (132-224)||(11511470-11511562)
chr4 (129-224)||(50052436-50052531)
chr4 (132-174)||(8343221-8343263)
chr4 (119-224)||(29234253-29234356)
chr4 (128-170)||(29239882-29239924)
chr4 (130-224)||(48183057-48183151)
chr4 (129-174)||(480505-480550)
chr4 (129-173)||(42044426-42044470)
chr4 (131-171)||(50813953-50813993)
[»] chr3 (12 HSPs)
chr3 (132-173)||(45058611-45058652)
chr3 (129-224)||(49607411-49607506)
chr3 (130-174)||(11095411-11095455)
chr3 (130-174)||(33118909-33118953)
chr3 (132-224)||(53982011-53982103)
chr3 (132-174)||(8076393-8076435)
chr3 (132-174)||(26141590-26141632)
chr3 (136-174)||(52629304-52629342)
chr3 (130-174)||(27714949-27714993)
chr3 (131-171)||(36331439-36331479)
chr3 (135-171)||(42823114-42823150)
chr3 (130-170)||(54868957-54868997)
[»] chr1 (13 HSPs)
chr1 (127-224)||(2581910-2582007)
chr1 (129-174)||(38595151-38595196)
chr1 (132-171)||(50591061-50591100)
chr1 (132-174)||(3000319-3000361)
chr1 (129-170)||(5959062-5959103)
chr1 (129-174)||(32813244-32813289)
chr1 (132-173)||(47748443-47748484)
chr1 (131-224)||(51898691-51898784)
chr1 (132-171)||(41608554-41608593)
chr1 (132-174)||(9474934-9474976)
chr1 (128-174)||(23597149-23597195)
chr1 (130-224)||(38632329-38632423)
chr1 (187-224)||(27564743-27564780)
[»] scaffold0321 (1 HSPs)
scaffold0321 (129-174)||(10167-10212)
[»] chr2 (12 HSPs)
chr2 (131-224)||(5574496-5574589)
chr2 (129-174)||(33436158-33436203)
chr2 (122-171)||(43490111-43490160)
chr2 (130-174)||(9058478-9058522)
chr2 (132-224)||(17473020-17473112)
chr2 (130-174)||(30915461-30915505)
chr2 (137-224)||(28863460-28863547)
chr2 (129-168)||(45097799-45097838)
chr2 (129-171)||(26891565-26891607)
chr2 (132-174)||(40613960-40614002)
chr2 (137-174)||(19930878-19930915)
chr2 (124-168)||(42257185-42257229)
[»] scaffold1268 (1 HSPs)
scaffold1268 (126-174)||(987-1035)
[»] scaffold1267 (1 HSPs)
scaffold1267 (126-174)||(987-1035)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 13762047 - 13761923
Alignment:
Q  8 ataggtcatccaacccgcttgagtgggagccgaccaatgatgaagcaccatgtccgtaaaa-caatgaaatcgaatacattaaatgagtaaatgatttta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13762047 ataggtcatccaacccgcttgagtgggagccgaccaatgatgaagcaccatgttcgtaaaaccaatgaaatcgaatacattaaatgagtaaatgatttta 13761948  T
Q  107 taatccaaaaccattaaaaattaaa 131  Q
     |||||||||||| |||||||||||    
T  13761947 gaatccaaaaccactaaaaattaaa 13761923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 30341463 - 30341421
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  30341463 aaagagttatgatacataaacacccttaggtggcaatacaccc 30341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 15990144 - 15990103
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  15990144 aagagttatgatacataaacacccttaggtggcaatacaccc 15990103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 15508124 - 15508085
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccc 15508085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 31110862 - 31110817
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||    
T  31110862 aaagagttatgatacatagacatccttaggtggcaatacacccttt 31110817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 4231548 - 4231587
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  4231548 gagttatgattcataaacatcattaggtggcaatacaccc 4231587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 6209570 - 6209528
Alignment:
Q  127 ttaaagagttatgatacataaacaccattaggtggcaatacac 169  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||    
T  6209570 ttaaagagtaatgatacatagacacccttaggtggcaatacac 6209528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 11427673 - 11427710
Alignment:
Q  187 aaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||||| || ||||||||||||||||||||||    
T  11427673 aaaatctgacacgtagtcacgtggatcccgcacaagca 11427710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 22880753 - 22880716
Alignment:
Q  137 atgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacacccttt 22880716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 38044188 - 38044236
Alignment:
Q  123 aaaattaaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  38044188 aaaattgaagagttatgatacataaacacccttaggtggcaatacaccc 38044236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 22343360 - 22343400
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  22343360 agagttatgatacataaacacccttaggtggcaatacaccc 22343400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 41915740 - 41915780
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  41915740 agagttatgatacataaacacccttaggtggcaatacaccc 41915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 8080485 - 8080391
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  8080485 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagca 8080391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 7727903 - 7727944
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacc 170  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  7727903 aaagagttatgatacataaacacccttaggtggtaatacacc 7727944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 38837214 - 38837258
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccctt 173  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||    
T  38837214 aaagagtaatgatacatagacacccttaggtggcaatacaccctt 38837258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 8238212 - 8238255
Alignment:
Q  132 gagttatgatacataaacaccat-taggtggcaatacacccttt 174  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  8238212 gagttatgatacataaacaccctgtaggtggcaatacacccttt 8238255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 40846213 - 40846174
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccc 40846174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 7389387 - 7389481
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||| |||||||||| ||||| |||||||||||||||| ||||            |||||||||||| || ||||||||| ||||||||||||    
T  7389387 aagagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 7389481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 3784050 - 3784087
Alignment:
Q  187 aaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||||| || ||||||||||||||||||||||    
T  3784050 aaaatctgacacgtagtcacgtggatcccgcacaagca 3784087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 11044185 - 11044230
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||| |||||||||| ||||| ||||||||||||||| |||||    
T  11044185 aaagagtaatgatacatagacacccttaggtggcaatacatccttt 11044230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 18207177 - 18207218
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacc 170  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  18207177 aaagagttatgatacatagacaaccttaggtggcaatacacc 18207218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 19329897 - 19329934
Alignment:
Q  187 aaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  19329897 aaaatctgacacgtaatcacgtggaccccgcacaagca 19329934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 16383374 - 16383416
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  16383374 aaagagttatgatacataaacacccttaggtggcaatacaccc 16383416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 30479574 - 30479532
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacacccttt 30479532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 34307214 - 34307255
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  34307214 aagagttatgatacataaacacccttaggtggcaatacaccc 34307255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 24307626 - 24307665
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaataca 168  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  24307626 aaagagttatgatacataaacacccttaggtggcaataca 24307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 24307895 - 24307857
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaataca 168  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24307895 aagagttatgatacataaacacccttaggtggcaataca 24307857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 32032724 - 32032766
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccctt 173  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  32032724 agagttatgatacataaacacccttaggtggcaatacatcctt 32032766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 37038469 - 37038571
Alignment:
Q  122 aaaaattaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaa 221  Q
    |||||| | ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||    
T  37038469 aaaaataatagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaa 37038568  T
Q  222 gca 224  Q
    |||    
T  37038569 gca 37038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 15048281 - 15048239
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacacccttt 15048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 4854965 - 4854921
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||| |||||||||| ||| | |||||||||||||||||||||    
T  4854965 aagagtaatgatacatagacatccttaggtggcaatacacccttt 4854921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 3921368 - 3921326
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  3921368 aaagagttatgatacataaacacccttaggtggcaatacaccc 3921326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 36733044 - 36732950
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||| |||||||||| ||||| |||||| ||||||||||||||            ||||||||||||||| ||||||||| ||||||||||||    
T  36733044 aagagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagca 36732950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 2740273 - 2740366
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  2740273 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 2740366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 2252269 - 2252229
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  2252269 agagttatgatacataaacatccttaggtggcaatacaccc 2252229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 14831814 - 14831906
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagca 14831906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 40145407 - 40145499
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 40145499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 18520979 - 18520892
Alignment:
Q  137 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 18520892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 28177770 - 28177817
Alignment:
Q  127 ttaaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||| ||||||||||||||| ||| | |||||||||||||||||||||    
T  28177770 ttaatgagttatgatacatagacatccttaggtggcaatacacccttt 28177817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 26720516 - 26720558
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacacccttt 26720558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 26990265 - 26990307
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacacccttt 26990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 39688999 - 39688961
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaataca 168  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  39688999 aagagttatgatacataaacacccttaagtggcaataca 39688961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 42414402 - 42414360
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||| |||||||||| |||||| ||||||||||||||||||||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacacccttt 42414360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 31009043 - 31009080
Alignment:
Q  187 aaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||||| || ||||||||||||||||||||||    
T  31009043 aaaatctgacacgtagtcacgtggatcccgcacaagca 31009080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 36875698 - 36875661
Alignment:
Q  137 atgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  36875698 atgatacatagacacccttaggtggcaatacacccttt 36875661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 35943992 - 35943956
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaataca 168  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaataca 35943956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 19670819 - 19670777
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  19670819 aaagagttatgatacataaacacccttaggtggcaatacaccc 19670777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 55475189 - 55475233
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  55475189 aagagttatgatacataaacatccttaggtggcaatacacccttt 55475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 44536846 - 44536804
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccctt 173  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  44536846 agagttatgatacataaacacttttaggtggcaatacaccctt 44536804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 55079814 - 55079776
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacc 170  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacc 55079776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 29548076 - 29548023
Alignment:
Q  115 aaccattaaaaattaaagagttatgatacataaacaccattaggtggcaataca 168  Q
    ||||| || ||||| ||||||||||||||||||||| | |||||||||||||||    
T  29548076 aaccactataaatttaagagttatgatacataaacatccttaggtggcaataca 29548023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 32766956 - 32766997
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  32766956 aagagttatgatacataaacactcttaggtggcaatacaccc 32766997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 47986207 - 47986244
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaataca 168  Q
    |||||||||||||||||||||| |||||||||||||||    
T  47986207 agagttatgatacataaacacccttaggtggcaataca 47986244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 6034044 - 6034136
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||  || ||||||||||||||||||||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagca 6034136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 11511562 - 11511470
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagca 11511470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 50052531 - 50052436
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    ||||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  50052531 aaagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 50052436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 8343263 - 8343221
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatccttt 8343221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 29234356 - 29234253
Alignment:
Q  119 attaaaaattaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgca 218  Q
    |||||||||||  |||| |||||||||| ||||| |||| ||||||||||||||||            |||||||||||| || ||||||||| ||||||    
T  29234356 attaaaaatta--gagtaatgatacatagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacacgtagtcacgtggaccccgca 29234259  T
Q  219 caagca 224  Q
    ||||||    
T  29234258 caagca 29234253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 29239882 - 29239924
Alignment:
Q  128 taaagagttatgatacataaacaccattaggtggcaatacacc 170  Q
    |||||||| |||||||||| ||||| |||||||||||||||||    
T  29239882 taaagagtaatgatacatagacacccttaggtggcaatacacc 29239924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 48183151 - 48183057
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  48183151 aagagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 48183057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 480550 - 480505
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||| |||||||||| ||||| ||||||| |||||||||||||    
T  480550 aaagagtaatgatacatagacacccttaggtgacaatacacccttt 480505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 42044470 - 42044426
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccctt 173  Q
    ||||||| |||||||||| ||||| ||||||||||||||| ||||    
T  42044470 aaagagtaatgatacatagacacccttaggtggcaatacatcctt 42044426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 50813993 - 50813953
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  50813993 agagttatgatacataaacactcttaggtggtaatacaccc 50813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 45058652 - 45058611
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctt 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45058652 gagttatgatacataaacacccttaggtggcaatacaccctt 45058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 49607411 - 49607506
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||||||| ||||||||    
T  49607411 aaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagca 49607506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 11095455 - 11095411
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||    
T  11095455 aagagtaatgatacatagacacccttaggtggcaatacacccttt 11095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 33118953 - 33118909
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||    
T  33118953 aagagttatgatacatagacacccttaggtgacaatacacccttt 33118909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 53982011 - 53982103
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 53982103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 8076393 - 8076435
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||| |||||||||||||||| |||||||||| ||||||||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacacccttt 8076435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 26141632 - 26141590
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacacccttt 26141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 52629304 - 52629342
Alignment:
Q  136 tatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacacccttt 52629342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 27714993 - 27714949
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||| |||||||||| ||||| |||||||| ||||||||||||    
T  27714993 aagagtaatgatacatagacacctttaggtggtaatacacccttt 27714949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 36331479 - 36331439
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||| |||| ||||||| |||||    
T  36331479 agagttatgatacataaacacccttagatggcaatgcaccc 36331439  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 42823114 - 42823150
Alignment:
Q  135 ttatgatacataaacaccattaggtggcaatacaccc 171  Q
    |||||||||||||||||||||| |||| |||||||||    
T  42823114 ttatgatacataaacaccattatgtggtaatacaccc 42823150  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 54868997 - 54868957
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacc 170  Q
    |||||| |||||||||| ||||| |||||||||||||||||    
T  54868997 aagagtaatgatacatagacacccttaggtggcaatacacc 54868957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 2581910 - 2582007
Alignment:
Q  127 ttaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  2581910 ttaaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 2582007  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 38595151 - 38595196
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  38595151 aaagagtaatgatacataaacacctttaggtggcaatacacccttt 38595196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 50591100 - 50591061
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccc 50591061  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 3000319 - 3000361
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacacccttt 3000361  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 5959103 - 5959062
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacc 170  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  5959103 aaagagttatgatacataaacacccttaagtggcaatacacc 5959062  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 32813244 - 32813289
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||    
T  32813244 aaagagttatgatacatagacatccttaggtggcaatacacccttt 32813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 47748443 - 47748484
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctt 173  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  47748443 gagttatgatacataaatacccttaggtggcaatacaccctt 47748484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 51898784 - 51898691
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  51898784 agagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 51898691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 41608593 - 41608554
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccc 41608554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 9474976 - 9474934
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||| |||||||||| ||||| |||||||||||||||||||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacacccttt 9474934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 23597195 - 23597149
Alignment:
Q  128 taaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||| |||||||||| ||| |||||||||||||||||| ||||    
T  23597195 taaagagtaatgatacatagacatcattaggtggcaatacactcttt 23597149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 38632423 - 38632329
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||| |||||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| ||||||||||||    
T  38632423 aagagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 38632329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 27564780 - 27564743
Alignment:
Q  187 aaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  27564780 aaaatctgacacgtaatcacgtggaccccgcacaagca 27564743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 10212 - 10167
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  10212 aaagagttatgatacatagacacctttaggtggcaatacatccttt 10167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 5574589 - 5574496
Alignment:
Q  131 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  5574589 agagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagca 5574496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 33436203 - 33436158
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  33436203 aaagagtaatgatacatagacacccttaggtggcaatacacccttt 33436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 43490111 - 43490160
Alignment:
Q  122 aaaaattaaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  43490111 aaaaaataatgagttatgatacataaacacccttaggtgacaatacaccc 43490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 9058478 - 9058522
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||    
T  9058478 aagagtaatgatacatagacacccttaggtggcaatacacccttt 9058522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 17473020 - 17473112
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagca 17473112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 30915461 - 30915505
Alignment:
Q  130 aagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||    
T  30915461 aagagtaatgatacatagacacccttaggtggcaatacacccttt 30915505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 28863460 - 28863547
Alignment:
Q  137 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 224  Q
    |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  28863460 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 28863547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 45097838 - 45097799
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaataca 168  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  45097838 aaagagttatgatacataaacatccttaggtggcaataca 45097799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 26891607 - 26891565
Alignment:
Q  129 aaagagttatgatacataaacaccattaggtggcaatacaccc 171  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  26891607 aaagagttatgatacatagccacccttaggtggcaatacaccc 26891565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 40614002 - 40613960
Alignment:
Q  132 gagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacacccttt 40613960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 19930915 - 19930878
Alignment:
Q  137 atgatacataaacaccattaggtggcaatacacccttt 174  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  19930915 atgatacatagacacccttaggtggcaatacacccttt 19930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 42257185 - 42257229
Alignment:
Q  124 aaattaaagagttatgatacataaacaccattaggtggcaataca 168  Q
    |||| |||||||||||||||||| ||| | |||||||||||||||    
T  42257185 aaataaaagagttatgatacatagacatctttaggtggcaataca 42257229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 1035 - 987
Alignment:
Q  126 attaaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||| |||| |||||||||| ||| | |||||||||||||||||||||    
T  1035 attaatgagtaatgatacatagacatctttaggtggcaatacacccttt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 1035 - 987
Alignment:
Q  126 attaaagagttatgatacataaacaccattaggtggcaatacacccttt 174  Q
    ||||| |||| |||||||||| ||| | |||||||||||||||||||||    
T  1035 attaatgagtaatgatacatagacatctttaggtggcaatacacccttt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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