View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_138 (Length: 228)
Name: NF16533_low_138
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_138 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 43925451 - 43925627
Alignment:
| Q |
36 |
acaatgaccagttcttaatcaattatgcttattacctagcttttctagaactacattaaagcacattcacagtgtttcatcattagtcctcattaacatc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43925451 |
acaatgaccagttcttaatcaattatgcttattacctagcttttctagaactacattaaagcacattcacagtgtttcatcattagtcctcattaacatc |
43925550 |
T |
|
| Q |
136 |
aagaagaatctcaagtgacttggtttttctcttccgaactctgcctgtttccttcaacaactcatccaaccttctct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43925551 |
aagaagaatctcaagtgacttggtttttctcttccgaactctgcctgtttccttcaacaactcatccaaccttctct |
43925627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University