View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_141 (Length: 222)
Name: NF16533_low_141
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_141 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 21845306 - 21845498
Alignment:
| Q |
15 |
aatgaacaagaaaccacccggatcccattgttggaattgtaaagtcttcgtgggaaggagaaaaagaatatccagtgccaccagagtcaaatttcatgga |
114 |
Q |
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| T |
21845306 |
aatgaacaagaaaccacccggatcccattgttggaattgtaaagtcttcgtgggaaggagaaaa-gaatatccagtgccaccagagtcaaatttcatgga |
21845404 |
T |
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| Q |
115 |
gtattttgctttcattgttatctgcatggattctgaagtccaacttgaaaatatcatgtcgtgactatttaaagggatagcaaaatgataagag |
208 |
Q |
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| T |
21845405 |
gtattttcctttcattgttatctgcatggattctgaagtccaacttgaaaatatcatgttgtgactatttaaagggatagcaaaatgataagag |
21845498 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 22011104 - 22010985
Alignment:
| Q |
16 |
atgaacaagaaaccacccggatcccattgttggaattgtaaagtcttcgtgggaaggagaaaaagaatatccagtgccaccagagtcaaatttcatggag |
115 |
Q |
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| T |
22011104 |
atgaacaagataccacccggatcccattgttggaattgtgaagtcttcatggaaag----aaaaaaatatccagt---acaatagtcaaatttcatggag |
22011012 |
T |
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| Q |
116 |
tattttgctttcattgttatctgcatg |
142 |
Q |
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| T |
22011011 |
tatcttcctttcattgttatctccatg |
22010985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 1786410 - 1786315
Alignment:
| Q |
15 |
aatgaacaagaaaccacccggatcccattgttggaattgtaaagtcttcgtgggaaggagaaaaagaatatccagtgccaccagagtcaaatttcat |
111 |
Q |
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| T |
1786410 |
aatgaacaagaggccacccggataccattgtaggaattataaagccttcgtgggaagga-aaaaagaatatccaatgtcaccatagtcaaatttcat |
1786315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 29275787 - 29275666
Alignment:
| Q |
28 |
ccacccggatcccattgttggaattgtaaagtcttcgtgggaaggagaaaaagaatatccagtgccaccagagtcaaatttcatggagtattttgctttc |
127 |
Q |
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||||||||||||||||||| ||||||||| ||||| | | ||||| |||| || | ||||||||||| |||||||||||||||| |||| ||||| |
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| T |
29275787 |
ccacccggatcccattgtttgaattgtaacgtcttgtttgaaaggaaaaaa----taggcggtgccaccagaatcaaatttcatggagtgttttcctttc |
29275692 |
T |
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| Q |
128 |
attgttatctgcatggattctgaagt |
153 |
Q |
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|||| ||| ||||| |||||||||| |
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| T |
29275691 |
attgacatcggcatgtattctgaagt |
29275666 |
T |
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