View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_146 (Length: 213)

Name: NF16533_low_146
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_146
NF16533_low_146
[»] chr6 (22 HSPs)
chr6 (20-195)||(4592140-4592315)
chr6 (20-189)||(4563620-4563789)
chr6 (86-195)||(4585608-4585720)
chr6 (107-194)||(4560502-4560589)
chr6 (109-195)||(4570970-4571056)
chr6 (102-195)||(4613766-4613859)
chr6 (107-195)||(4557121-4557209)
chr6 (102-199)||(4598162-4598259)
chr6 (108-180)||(4574305-4574377)
chr6 (100-195)||(4579421-4579516)
chr6 (111-176)||(4480693-4480758)
chr6 (111-174)||(4492955-4493018)
chr6 (111-176)||(4505857-4505922)
chr6 (111-195)||(4617022-4617106)
chr6 (111-154)||(4515210-4515253)
chr6 (92-195)||(4516302-4516405)
chr6 (117-195)||(4504445-4504523)
chr6 (111-187)||(4601789-4601865)
chr6 (117-167)||(3171747-3171797)
chr6 (117-195)||(4267214-4267292)
chr6 (117-175)||(4392094-4392152)
chr6 (107-177)||(4606957-4607027)
[»] chr8 (3 HSPs)
chr8 (100-195)||(20863891-20863986)
chr8 (111-195)||(1674226-1674310)
chr8 (80-178)||(16686332-16686432)
[»] chr5 (1 HSPs)
chr5 (111-194)||(28000148-28000231)
[»] chr3 (1 HSPs)
chr3 (111-192)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (117-195)||(4734-4812)
[»] chr7 (1 HSPs)
chr7 (117-167)||(3086426-3086476)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 4592140 - 4592315
Alignment:
Q  20 atgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttattt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592140 atgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttattt 4592239  T
Q  120 aagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  4592240 aagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttc 4592315  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 4563620 - 4563789
Alignment:
Q  20 atgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa-ttacttaaatttgattttatt 118  Q
    |||| |||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||  |||||||||||| ||||||||||| |||||| ||    
T  4563620 atgacttcacttacatcagaacttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaagttacttaaatt-gattttgtt 4563718  T
Q  119 taagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctcc 189  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| | ||||||    
T  4563719 taagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctcc 4563789  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 4585608 - 4585720
Alignment:
Q  86 ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgct 182  Q
    |||||||||||||| ||||| |  ||||||||||||||||||| |||||||| |||| ||| |||||||| || ||||||||||||||||||||||||      
T  4585608 ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtc 4585707  T
Q  183 ctcctccgccttc 195  Q
    |||||||||||||    
T  4585708 ctcctccgccttc 4585720  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 4560502 - 4560589
Alignment:
Q  107 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgcctt 194  Q
    ||||||||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||  | ||||||||||    
T  4560502 tttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctt 4560589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 4570970 - 4571056
Alignment:
Q  109 tgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||  |||||||||||||    
T  4570970 tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4571056  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 4613859 - 4613766
Alignment:
Q  102 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    |||| ||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||  |||||| ||||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttc 4613766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 4557121 - 4557209
Alignment:
Q  107 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||||||| ||||||||| |||||||| |||| ||| ||||| ||||| ||||||||||| ||||||||||||  |||||||||||||    
T  4557121 tttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4557209  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 4598162 - 4598259
Alignment:
Q  102 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcatct 199  Q
    |||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| |||||||   |||||||||||||||||    
T  4598162 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatct 4598259  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 4574305 - 4574377
Alignment:
Q  108 ttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtg 180  Q
    |||||||| |||||||||||||||||| |||| ||| ||||||||  | ||||||||||||||||||||||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtg 4574377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 4579421 - 4579516
Alignment:
Q  100 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    |||||| || |||||| ||| || ||||||||||| |||| ||| ||||||||||| |||||||| |||||||||||||||  ||||||| |||||    
T  4579421 acttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttc 4579516  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 4480693 - 4480758
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 176  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||| ||||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtct 4480758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 4492955 - 4493018
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggt 174  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggt 4493018  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 4505857 - 4505922
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 176  Q
    ||||| |||||||||||||||||| || | |||||||||||||||  |||||||||| ||||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtct 4505922  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 4617022 - 4617106
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||| |||||||||||| ||||| || | ||||| ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttc 4617106  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 4515253 - 4515210
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttca 154  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttca 4515210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 4516302 - 4516405
Alignment:
Q  92 aaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc 191  Q
    ||||||| |||| ||| | ||||| ||| |||| ||||||||| |||| ||| |||||||||| |||||||||||| || ||||| |||  |||||| ||    
T  4516302 aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgc 4516401  T
Q  192 cttc 195  Q
    ||||    
T  4516402 cttc 4516405  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 4504523 - 4504445
Alignment:
Q  117 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||||||| || ||||| |||| ||||||||||||||| ||||||||||| ||| |||| |||  |||||| ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttc 4504445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 4601789 - 4601865
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcct 187  Q
    ||||| |||||||||||||||||| || | |||||||| |||| | ||||||||||| ||  |||| ||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcct 4601865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3171747 - 3171797
Alignment:
Q  117 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 167  Q
    ||||||||| |||||||| |||| ||| ||||||||||| |||||||||||    
T  3171747 tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaacc 3171797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 4267292 - 4267214
Alignment:
Q  117 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||||||| ||| |||| || ||||||    
T  4267292 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttc 4267214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 4392152 - 4392094
Alignment:
Q  117 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtc 175  Q
    ||||||||| |||||||| |||| |||||||||||||||  ||||| |||| |||||||    
T  4392152 tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtc 4392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 4607027 - 4606957
Alignment:
Q  107 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 177  Q
    ||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || ||||||    
T  4607027 tttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctc 4606957  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 20863986 - 20863891
Alignment:
Q  100 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| | ||||| |||  |||||| ||||||    
T  20863986 acttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttc 20863891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 1674226 - 1674310
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttc 1674310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 16686432 - 16686332
Alignment:
Q  80 actgctttgcataaaaaa--ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 177  Q
    ||||| ||||||||||||  | |||||  ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| |||||||||    
T  16686432 actgcattgcataaaaaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctc 16686333  T
Q  178 g 178  Q
    |    
T  16686332 g 16686332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 28000231 - 28000148
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgcctt 194  Q
    ||||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| |||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctt 28000148  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 1281114 - 1281195
Alignment:
Q  111 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgcc 192  Q
    ||||| |||||||||||  ||||| |||| |||||| |||||||| ||||||||||| || ||||| ||| |||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgcc 1281195  T

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Target: scaffold0477 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 4812 - 4734
Alignment:
Q  117 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 195  Q
    ||||||||  |||||||| |||| ||||||||||||||| |||||||| || ||||  || ||| ||||||| ||||||    
T  4812 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttc 4734  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3086426 - 3086476
Alignment:
Q  117 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 167  Q
    ||||||||| |||||||| || | ||||||||||||||| |||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaacc 3086476  T

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