View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_150 (Length: 208)
Name: NF16533_low_150
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_150 |
 | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 26835092 - 26835265
Alignment:
| Q |
20 |
gatggtaacctggcgaaatcttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26835092 |
gatggtaacctggcgaaaccttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
26835191 |
T |
|
| Q |
120 |
ccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
26835192 |
ccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatcgacgaacctctctg |
26835265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 45419901 - 45420074
Alignment:
| Q |
20 |
gatggtaacctggcgaaatcttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45419901 |
gatggtaacctggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattct |
45420000 |
T |
|
| Q |
120 |
ccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45420001 |
ccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctg |
45420074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 45410597 - 45410765
Alignment:
| Q |
25 |
taacctggcgaaatcttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattctccctc |
124 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45410597 |
taacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctc |
45410696 |
T |
|
| Q |
125 |
caaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctg |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45410697 |
caaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctg |
45410765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 29799689 - 29799821
Alignment:
| Q |
53 |
tagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatctt |
152 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || |
|
|
| T |
29799689 |
tagagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccatttt |
29799788 |
T |
|
| Q |
153 |
gtgtttgcatccaccattaacatcatccatgaa |
185 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |
|
|
| T |
29799789 |
ttggttgcatccaccatttacatcatccatgaa |
29799821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 63466 - 63592
Alignment:
| Q |
67 |
gttaatactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtttgcatccac |
166 |
Q |
| |
|
||||| ||||| || |||||||| || ||||||| ||||||| ||| |||||||||||| |||||||| || |||||||| |||| | |||| | | |
|
|
| T |
63466 |
gttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggtggcattccc |
63565 |
T |
|
| Q |
167 |
cattaacatcatccatgaacctctctg |
193 |
Q |
| |
|
|||| |||||| |||||||||||||| |
|
|
| T |
63566 |
cattggcatcattcatgaacctctctg |
63592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University