View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_153 (Length: 206)
Name: NF16533_low_153
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_153 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 1511230 - 1511049
Alignment:
| Q |
12 |
actgaaatgaatcacaattagggttcgtttggttcagttctcaaaaaccattttaataaaaaccagtcaatttctcaaatcaattttggtttggtttaaa |
111 |
Q |
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| T |
1511230 |
actgaattgaatcacatttagggtccgtttggttcagttctcaaaaactattttaataaaaacctgttaatttctcaaatcaattttggtttggtttaaa |
1511131 |
T |
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| Q |
112 |
ccgatttaaagttttaaaccgcgttagttatatttat--ccggtttcaactagtttcatgttgtattcttttttattcaaac |
191 |
Q |
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| T |
1511130 |
ccgatttaaagttttaaaccgcgttagttatatttatccccggtttcaactagtttcatgttgtattcttttttattcaaac |
1511049 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 44198507 - 44198471
Alignment:
| Q |
37 |
cgtttggttcagttctcaaaaaccattttaataaaaa |
73 |
Q |
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| T |
44198507 |
cgtttggttcagtttttaaaaaccattttaataaaaa |
44198471 |
T |
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