View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_154 (Length: 204)
Name: NF16533_low_154
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_154 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 9776344 - 9776157
Alignment:
| Q |
1 |
atttttggggtgagattgagttgccggagcttgttaatggaacgtggtggagttactctgttgcggtggtgccggagattgaacttccgtagcagcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9776344 |
atttttggggtgagattgagttgccggagcttgttaatggaacgtggtggagttactctgttgcggtggtgccggagattgaacttccgtagcagcaatt |
9776245 |
T |
|
| Q |
101 |
ctacactgcatggttttagtgtgtattaattattgcttaacnnnnnnncttgcttaattattgcttaattaagctatcttctatatat |
188 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9776244 |
cttcactgcatggttttagtgtgtattaattattgcttaactttttttgttgcttaattattgcttaattaagctatcttctatatat |
9776157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University