View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_16 (Length: 554)
Name: NF16533_low_16
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 5726949 - 5727396
Alignment:
| Q |
7 |
acatcatcatgaaccctaaatagattggacttcaccctattgtagtgaacaaaaactagcttaatgtttatatctactgggtaagtgttaatggttctgt |
106 |
Q |
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| T |
5726949 |
acatcaacatgaaccctaaatagattggacttcaccttattgtagtaaactaaaactagcttaatgtttatatctactgggtaagtgttaatggttttgt |
5727048 |
T |
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| Q |
107 |
ggtgtggtttacaaatttaccaaacgcactaatttatacaaggttttatgcattttggactacnnnnnnnnn-tcatgtatttaatttttcagattatat |
205 |
Q |
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| T |
5727049 |
ggtgtggtttgcaaatttaccaaacgcactaatttatataaggttttgtgcattttggactacaaaaaaaaaatcatgtatttaatttttcagattatat |
5727148 |
T |
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| Q |
206 |
aatctgaaatataccacatccccaaatgcacaagttattacacggtcttggcatgtttcaaatcatattaactcgaatcagtcaaaatactatttttggg |
305 |
Q |
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| T |
5727149 |
aatctgaactatgccacatcccaaaatgtacaaattattacacggtcttggcatgtttcaaatcatat-aactggaaccagtcaaaatactgtttttggg |
5727247 |
T |
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| Q |
306 |
atgatataatccgaaacaagcccaaaacttggaagatgttgttgtagataaggttttgttggcaagaagattttgagtcaatttaggacgttttatatgt |
405 |
Q |
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| T |
5727248 |
gtgatataattcgaaacaagcccaaaacttggacgatgtcgttgcagataaggttttgttggtaagatgattttgagtcaatttaggacgtttcatatgt |
5727347 |
T |
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| Q |
406 |
tcttattgattgtagctacaatatacatgctcgtttgtttataaatagc |
454 |
Q |
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| T |
5727348 |
tcttattgactgtagctacaatatacatgctcgtttgtttataaatagc |
5727396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 35375874 - 35375776
Alignment:
| Q |
62 |
ctagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaatttaccaaacgcactaatttatacaaggttttatgcatt |
160 |
Q |
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| T |
35375874 |
ctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaaggttttgtgcatt |
35375776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 12989774 - 12989830
Alignment:
| Q |
60 |
aactagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggttt |
116 |
Q |
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| T |
12989774 |
aactagcttagtgtttatatctattggataaatgttaatggttatgtggtgtggttt |
12989830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 13063395 - 13063457
Alignment:
| Q |
60 |
aactagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaat |
122 |
Q |
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| T |
13063395 |
aactagcttggtgtttatatctattggataaatgttaatggttatgtggtgtggtttgcaaat |
13063457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 41931466 - 41931549
Alignment:
| Q |
60 |
aactagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaatttaccaaacgcactaatttat |
143 |
Q |
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| T |
41931466 |
aactagtttaatgtttatatcaactgaataagtgttcatggttttgttgtgtggtttgcaaatgaaccaaacgtacaaatttat |
41931549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 11883542 - 11883594
Alignment:
| Q |
71 |
tgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaatt |
123 |
Q |
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| T |
11883542 |
tgtttacatctactggataagtgttcatgattttgtggtgtggtttaccaatt |
11883594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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