View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_17 (Length: 554)
Name: NF16533_low_17
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 22 - 546
Target Start/End: Original strand, 14751886 - 14752410
Alignment:
| Q |
22 |
gtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaa |
121 |
Q |
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| T |
14751886 |
gtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcga |
14751985 |
T |
|
| Q |
122 |
cgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttga |
221 |
Q |
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| T |
14751986 |
cgaatatgggtggcacaagcggtaggaacgtgactttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttga |
14752085 |
T |
|
| Q |
222 |
acctaaagagagaagcccagcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcatggtta |
321 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14752086 |
acctaaagagagaagcccagcgaacattgctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcgtggtta |
14752185 |
T |
|
| Q |
322 |
aacctagcacatacattttgaaccattgctatgaggtttctatgtgaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtag |
421 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
14752186 |
aacctagcacatacaatttgaaccattgctatgaggtttctatgtgaagatactactcctttgcttggtcctgttgttccagatgagtagagtagagtag |
14752285 |
T |
|
| Q |
422 |
ctgtgtcatcttggttgacttgctctctcattggtcttctggccggtccagaacttttagtccacgtgtcatcataggattgaccttctttcttcatcat |
521 |
Q |
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| T |
14752286 |
ctgtgtcgtcttggttgacttgctctctctttggtcttctggccggtccagaacttttagtccacgtgtcatcataggattgaccttctttcttcatcat |
14752385 |
T |
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| Q |
522 |
ttcctccagtgtgtttgatgatgtc |
546 |
Q |
| |
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| T |
14752386 |
ttcctccagtgtgtttgatgatgtc |
14752410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 57 - 440
Target Start/End: Original strand, 8534268 - 8534651
Alignment:
| Q |
57 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgact |
156 |
Q |
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| T |
8534268 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
8534367 |
T |
|
| Q |
157 |
ttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacatggcta |
253 |
Q |
| |
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|||| || ||||| |||||||||||||| ||||| ||||| || ||||||||||| || |||||||| | || |||||||| ||| |||| || | |
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| T |
8534368 |
ctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
8534467 |
T |
|
| Q |
254 |
gaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcatggttaaacctagcacatacattttgaaccattgctat |
353 |
Q |
| |
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|||||||||| |||||||| |||| || |||||||| || | || ||| | ||||| | | |||||||| |||| ||||||||| ||||| |
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| T |
8534468 |
gaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccg---aacctagccattacaacttgaaccatcgctat |
8534564 |
T |
|
| Q |
354 |
gaggtttctatgtgaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgac |
440 |
Q |
| |
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|| || | || |||||||||||||||||||| |||||||||||||| |||||||| |||| || |||||||||| |||||||| |
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| T |
8534565 |
tagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgac |
8534651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 57 - 440
Target Start/End: Original strand, 8599507 - 8599890
Alignment:
| Q |
57 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgact |
156 |
Q |
| |
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|||||||||||| |||||||| || || ||||||||||| ||||| || ||||| ||||||||||| ||||| || |||||||| |||| ||| || || |
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| T |
8599507 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
8599606 |
T |
|
| Q |
157 |
ttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacatggcta |
253 |
Q |
| |
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| T |
8599607 |
ctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
8599706 |
T |
|
| Q |
254 |
gaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcatggttaaacctagcacatacattttgaaccattgctat |
353 |
Q |
| |
|
|||||||||| |||||||| |||| || |||||||| || | || ||| | ||||| | | |||||||| |||| ||||||||| ||||| |
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| T |
8599707 |
gaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccg---aacctagccattacaacttgaaccatcgctat |
8599803 |
T |
|
| Q |
354 |
gaggtttctatgtgaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgac |
440 |
Q |
| |
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|| || | || |||||||||||||||||||| |||||||||||||| |||||||| |||| || |||||||||| |||||||| |
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| T |
8599804 |
tagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgac |
8599890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 440
Target Start/End: Complemental strand, 8613919 - 8613536
Alignment:
| Q |
57 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgact |
156 |
Q |
| |
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|||||||||||| |||||||| || || ||||||||||| ||||| || ||||| || |||||||| ||||| || |||||||| |||| ||| || || |
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| T |
8613919 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
8613820 |
T |
|
| Q |
157 |
ttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacatggcta |
253 |
Q |
| |
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| T |
8613819 |
ctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
8613720 |
T |
|
| Q |
254 |
gaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcatggttaaacctagcacatacattttgaaccattgctat |
353 |
Q |
| |
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|||||||||| |||||||| |||| || |||||||| || | || ||| | ||||| | | |||||||| |||| ||||||||| ||||| |
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| T |
8613719 |
gaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccg---aacctagccattacaacttgaaccatcgctat |
8613623 |
T |
|
| Q |
354 |
gaggtttctatgtgaagatactactcctttgctaggtcctgttgttccagatgagtaaagtagagtagctgtgtcatcttggttgac |
440 |
Q |
| |
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|| || | || |||||||||||||||||||| |||||||||||||| |||||||| |||| || |||||||||| |||||||| |
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|
| T |
8613622 |
tagattcttgtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgac |
8613536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 510
Target Start/End: Original strand, 53619060 - 53619095
Alignment:
| Q |
475 |
cttttagtccacgtgtcatcataggattgaccttct |
510 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
53619060 |
cttttagtccacgtgtcatcatagtattgaccttct |
53619095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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