View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_18 (Length: 551)
Name: NF16533_low_18
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 5018255 - 5018775
Alignment:
| Q |
14 |
gatgaagtagagttgcaagtaagacgcatgagtaattttgggatgggtatggaaatccaaatttcagatcttgctaggccagaggagttagagaagagac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5018255 |
gatgaagtagagttgcaagtaagacgcatgagtaattttgggatgggtatggaaatccaaatttcagatcttgctaggccagaggagttagagaagagac |
5018354 |
T |
|
| Q |
114 |
aacagatatgtgctttagtactgctgtgttatatcgcgcattcagagtcggagcatttgaattctgagaacgagtgtaggtctgttcaactgatggcaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5018355 |
aacagatatgtgctttagtactgctgtgttatatcgcgcattcagagtcggagcatttgaattctgagaacgagtgtaggtctgttcaactgatggcaca |
5018454 |
T |
|
| Q |
214 |
gctagtagaaactgaaaaatgccgagacatcattcgcatgagccctcaagcatttctgaagctttgtgagaaattaaggtcatctggtagaatgaaggat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5018455 |
gctagtagaaactgaaaaatgccgagacatcattcgcatgagccctcaagcatttctgaagctttgtgagaaattaaggtcatctggtagaatgaaggat |
5018554 |
T |
|
| Q |
314 |
tcaacaggggttacagttgaggggcaagttgctgaattcctatatattgtagggcaagcttcgaaaaacagaaccgtgcctttcctttttaataagtcgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5018555 |
tcaacaggggttacagttgaggggcaagttgctgaattcctatatattgtagggcaagcttcgaaaaacagaaccgtgcctttcctttttaataagtcgg |
5018654 |
T |
|
| Q |
414 |
gggagacatttactcgacgctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttctgatgtagatgtacatacaca |
513 |
Q |
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| T |
5018655 |
gggagacatttactcgacgctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttctgatgtagatgtacatacaca |
5018754 |
T |
|
| Q |
514 |
aatacttaacgatgacaaatt |
534 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5018755 |
aatacttaacgatgacaaatt |
5018775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 172 - 534
Target Start/End: Original strand, 5021112 - 5021477
Alignment:
| Q |
172 |
gaattctgagaacgagtgtaggtctgttcaactgatggcacagctagtagaaactgaaaaatgccgagacatcattcgcatgagccctcaagcatttctg |
271 |
Q |
| |
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|||||||||||| || ||||||||||||| | ||||||||| ||||| ||||||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
5021112 |
gaattctgagaatgaacataggtctgttcaattaatggcacagttagtacaaactgaaaaatgtcggcgcattattcgcatgagccctcaagcatttctg |
5021211 |
T |
|
| Q |
272 |
aagctttgtgagaaattaaggtcatctggtagaatgaagga---ttcaacaggggttacagttgaggggcaagttgctgaattcctatatattgtagggc |
368 |
Q |
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| T |
5021212 |
aagctctgtgagaagttaagatcatctgttggaatgaaggattcttctacaagggttacagttgaggggctagttgctgaatttttatacgttgtaggac |
5021311 |
T |
|
| Q |
369 |
aagcttcgaaaaacagaaccgtgcctttcctttttaataagtcgggggagacatttactcgacgctttgacaatgttttacgaggaatcatctcattaga |
468 |
Q |
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| | | | |||| ||||| |||||||||||| || | ||||| |||| ||||| ||| | |||| || ||||||||| || ||||| |||||| | |
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| T |
5021312 |
aggatgcaaaaagtcgaaccacacctttcctttttcatcaatcgggtgagaaatttaatcgccactttcactatgttttacaagccatcatatcattaca |
5021411 |
T |
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| Q |
469 |
aaatgagttccttgtccaaccttctgatgtagatgtacatacacaaatacttaacgatgacaaatt |
534 |
Q |
| |
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||||| ||| |||||||||||| || ||||||| ||||||| |||||||| ||||||| |
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| T |
5021412 |
ctgggagtttcttctccaaccttctggtgccgatgtaccctcacaaattcttaacgacaacaaatt |
5021477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 5020950 - 5021024
Alignment:
| Q |
23 |
gagttgcaagtaagacgcatgagtaattttgggatgggtatggaaatc-caaatttcagatcttgctaggccaga |
96 |
Q |
| |
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||||| ||||||||||| |||||||| || |||||||| ||||||||| | ||||||||| |||||||||||| |
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| T |
5020950 |
gagttacaagtaagacgaatgagtaagttcgggatgggcatggaaatcagacttttcagatcatgctaggccaga |
5021024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 16651505 - 16651566
Alignment:
| Q |
433 |
ctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttctg |
494 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| |
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| T |
16651505 |
ctttcacaatgttttacgagccatcatctcattagaagatgaatatcttgtccaaccttctg |
16651566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 17625865 - 17625926
Alignment:
| Q |
433 |
ctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttctg |
494 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| |
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| T |
17625865 |
ctttcacaatgttttacgagccatcatctcattagaagatgaatatcttgtccaaccttctg |
17625926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 20255458 - 20255398
Alignment:
| Q |
433 |
ctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttct |
493 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||| |||| || |||||||||| |||| |
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| T |
20255458 |
ctttcacaatgttttacgagccatcatctcattagaagatgaatttcttgtccaacattct |
20255398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 12858801 - 12858862
Alignment:
| Q |
433 |
ctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttctg |
494 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| |
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| T |
12858801 |
ctttcacaatgttttacgagccatcatctcattagaagatgaatatcttgtccaaccttctg |
12858862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 494
Target Start/End: Original strand, 15964461 - 15964522
Alignment:
| Q |
433 |
ctttgacaatgttttacgaggaatcatctcattagaaaatgagttccttgtccaaccttctg |
494 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| |
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|
| T |
15964461 |
ctttcacaatgttttacgagccatcatctcattagaagatgaatatcttgtccaaccttctg |
15964522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 12858583 - 12858611
Alignment:
| Q |
215 |
ctagtagaaactgaaaaatgccgagacat |
243 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12858583 |
ctagtagaaactgaaaaatgccgagacat |
12858611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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