View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_19 (Length: 549)
Name: NF16533_low_19
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Complemental strand, 43103107 - 43102577
Alignment:
| Q |
19 |
tcttcccctaacaagacaaacataatcatggagcaagtgcatttggtaagtgactacaccaaaccaaatacatgttccttttcaaccatcatggaagaaa |
118 |
Q |
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| T |
43103107 |
tcttcccctaacaagacaaacataatcatggagcaagtgcatttggtaagtgactacaccaaaccaaatacatgttccttttcaaccatcatggaagaaa |
43103008 |
T |
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| Q |
119 |
tgaaatccctaatgatgcttgcttttccaatagccataacagctcttattttctactctcgttccatggtgtccatgatgtttttaggctacctaggaga |
218 |
Q |
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| T |
43103007 |
tgaaatccctaatgatgcttgcttttccaatagccataacagctcttattttctattctcgttccatggtgtccatgatgtttttaggctacctaggaga |
43102908 |
T |
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| Q |
219 |
acttgaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctttgttca |
318 |
Q |
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| T |
43102907 |
acttgaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctctgttca |
43102808 |
T |
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| Q |
319 |
caagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccattcccatttccttcatgtggc |
418 |
Q |
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| T |
43102807 |
caagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccattcccatttccttcatgtggc |
43102708 |
T |
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| Q |
419 |
ttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctctccctgatctcatcacaaa |
518 |
Q |
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| T |
43102707 |
ttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctctccctgatctcatcacaaa |
43102608 |
T |
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| Q |
519 |
ttcattcatccaccctatacgtatttacctt |
549 |
Q |
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| T |
43102607 |
ttcattcatccaccctatacgtatttacctt |
43102577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 368
Target Start/End: Original strand, 33948604 - 33948749
Alignment:
| Q |
223 |
gaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctttgttcacaag |
322 |
Q |
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||||||||| | |||||| | ||||| || || || ||||| ||||| || |||||||| || ||| | ||| | || ||||||||||||||||| |||| |
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| T |
33948604 |
gaacttgcatcaggttcattagccatagcttttgcaaacataaccggttattcagttctttctggtttatctttaggtatggaacctctttgttctcaag |
33948703 |
T |
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| Q |
323 |
ccttcggagcaaaccgtcctaaactcctatccttaacacttcaacg |
368 |
Q |
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| T |
33948704 |
cctttggtgctaaccgtccaaaacttctatcattaacacttcaacg |
33948749 |
T |
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