View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_20 (Length: 547)
Name: NF16533_low_20
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 50148421 - 50148938
Alignment:
| Q |
17 |
cagtgttgttgcttcaaaggtgccattgtatgttgacaggaatggttcgttacccacagcaacataccttgtgaagaccacagagaataaatgcgtatga |
116 |
Q |
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| T |
50148421 |
cagtgttgttgcttcaaaggtgccattgtatgttgacaggaatggttcgttacccacagcaacataccttgtgaagaccacagagaataaatgtgtatga |
50148520 |
T |
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| Q |
117 |
aatgacaaaatatagaatgcagtggctgatttcagaatcagtgaattatcaaacataacaacagaagaaaaaagagtagcataactattaactaggacac |
216 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50148521 |
aatgacaaaatatagaatgtagtggctgatttcataatcagtgaattatcaaacataacaacagaagaaaaaagagtagcataactattaactaggacac |
50148620 |
T |
|
| Q |
217 |
aacattatacgtaatcaatgagatacaattaaatcctcttggagaaagttagcagaatcattattgataatgcttgtgtccatgttatgtcctatgcgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50148621 |
aacattatacgtaatcaatgagatacaattaaatcctcttagagaaagttagcagaatcattattgataatgcttgtgtccatgttatgtcctatgcgtg |
50148720 |
T |
|
| Q |
317 |
tttcaaatcttacatttcaactgaaatgttcaagatacgtatccaaatcagaagaataatggagcaaaaaactaaaatctgccacatgcattatttgaca |
416 |
Q |
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| T |
50148721 |
tttcaaatcttacatttcaactgaaatgttcaagatacgtatccaaatcagaagaataatggagcaaaaaactaaaatctgccacatgcattatttgaca |
50148820 |
T |
|
| Q |
417 |
gtggggagatcagataacttgacagcaacataaacatttggtgattgtgttagatacaataacttgtggtaaaacaccacatgtactgaattttaaatct |
516 |
Q |
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| T |
50148821 |
gtggggagatcagataacttcacagcaacataaacatttggtgattgtgttagatacaataacttgtggtaaaacaccacatgtactgaattttaaatct |
50148920 |
T |
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| Q |
517 |
tgcatctttacttggttc |
534 |
Q |
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| T |
50148921 |
tgcatctttacttggttc |
50148938 |
T |
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Back To:
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1753687 - 1753618
Alignment:
| Q |
18 |
agtgttgttgcttcaaaggtgccattgtatgttgacaggaatggttcgttacccacagcaacataccttg |
87 |
Q |
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|||||||| ||||||||||| || ||||| ||||||| ||| |||||||| || ||||||| ||||||| |
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| T |
1753687 |
agtgttgtggcttcaaaggtaccgttgtaagttgacaagaaaggttcgtttccaacagcaatgtaccttg |
1753618 |
T |
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