View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_22 (Length: 544)
Name: NF16533_low_22
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 22 - 538
Target Start/End: Original strand, 46824651 - 46825167
Alignment:
| Q |
22 |
gctacatcatcccatctcccaacaatggcataaagatttgacattaatacataaaatccaccatttttgtgatttaatagaaacaannnnnnngccaagc |
121 |
Q |
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| T |
46824651 |
gctacatcatcccatctcccaacaatggcataaagatttgacattaatacataaaatccaccatttttgtgatttaatagaaacaatttttttgccaagc |
46824750 |
T |
|
| Q |
122 |
attccccaagcttcacctctcgttggatgcaacaagcatttagcaaagctccccagacagcagaatcgggctgaatctccattttgtttataaattcaat |
221 |
Q |
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| T |
46824751 |
attccccaagcttcacctctcgttggatgcaacaagcatttaacaaagctccccagacagcagaatcgggctgaatctccattttgtttataaattcaat |
46824850 |
T |
|
| Q |
222 |
tgcttccttgaacaagccttctttacctaatagagcaactatgcatgcataatgttgcagactcggcatcaaaccatactctttagtcatgatattgaag |
321 |
Q |
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| T |
46824851 |
tgcttccttgaacaagccttctttacctaatagagcaactatgcatgcataatgttgcagactgggcatcaaaccatactctttagtcatgatattgaag |
46824950 |
T |
|
| Q |
322 |
tattccagtcctaaatagacaagttccccgtgcgtgcatgctgccaaaactcccaagaaggtgattttatccggttttaacccttgttcttgcagtttag |
421 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46824951 |
tattccagtcctaaatagacaagtcccccatgcgtgcatgctgccaaaactcccaagaaggtgattttatccggttttaacccttgttcttgcagtttag |
46825050 |
T |
|
| Q |
422 |
aataacaaccgaaagctgtatgctcaagaccatataaactataacctgatatgatggcattccatgttgccaaacatggatccttgatgttataaaatac |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46825051 |
aataacaaccgaaagctgtatgctcaagaccatataaactataacctgatatgatggcattccatgttgccaaacatggatccttgatgttataaaatac |
46825150 |
T |
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| Q |
522 |
cttttcagtataatcta |
538 |
Q |
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|||||||| |||||||| |
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| T |
46825151 |
cttttcagcataatcta |
46825167 |
T |
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