View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_26 (Length: 519)

Name: NF16533_low_26
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_26
NF16533_low_26
[»] chr1 (7 HSPs)
chr1 (26-501)||(3534245-3534720)
chr1 (426-501)||(3526974-3527049)
chr1 (76-118)||(12772146-12772188)
chr1 (81-161)||(9007773-9007854)
chr1 (76-121)||(15381849-15381894)
chr1 (72-117)||(44622808-44622853)
chr1 (146-191)||(52363015-52363060)
[»] chr4 (2 HSPs)
chr4 (99-191)||(924333-924425)
chr4 (81-141)||(4045052-4045112)
[»] chr3 (1 HSPs)
chr3 (81-140)||(55195845-55195904)
[»] chr7 (2 HSPs)
chr7 (81-123)||(34807844-34807886)
chr7 (76-118)||(45199858-45199900)
[»] chr5 (1 HSPs)
chr5 (76-118)||(4985833-4985875)
[»] chr2 (1 HSPs)
chr2 (78-168)||(12126238-12126327)
[»] chr8 (1 HSPs)
chr8 (99-140)||(35149909-35149950)
[»] chr6 (1 HSPs)
chr6 (81-141)||(15126293-15126353)


Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 26 - 501
Target Start/End: Complemental strand, 3534720 - 3534245
Alignment:
Q  26 ccttaacaaaaatatttgtgacaatcactatttggtttattatttattgatcaagtagtttaatggttagaaatcactttttaagatgaataaatgagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3534720 ccttaacaaaaatatttgtgacaatcactatttggtttattatttattgatcaagtagtttaatgattagaaatcactttttaagatgaataaatgagtt 3534621  T
Q  126 gtttggagttcgaaccaaaaccctacctataacaattcattatttctgtcaactgagttatgttcaaagatacattattaggtttattatattctatgca 225  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3534620 gtttggagttcgaaccaaaaccctacatataacaattcattatttttgtctactgagttatgttcaaggatacattattaggtttattatattctatgca 3534521  T
Q  226 aaaacaatagacctgaatgattttcttctaaacaaaaacagacccgaattattatgatttatcctccctcttctgcttccttaattaacattgtaatgat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534520 aaaacaatagacctgaatgattttcttctaaacaaaaacagacccgaattattatgatttatcctccctcttctgcttccttaattaacattgtaatgat 3534421  T
Q  326 taaattaaccaaaatgtgagataaacatatgttctttagtggattttggagatattatcacaacttactcctgtatatatctccattttgtcgtggttgc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534420 taaattaaccaaaatgtgagataaacatatgttctttagtggattttgaagatattatcacaacttactcctgtatatatctccattttgtcgtggttgc 3534321  T
Q  426 ttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534320 ttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccc 3534245  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 3527049 - 3526974
Alignment:
Q  426 ttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccc 501  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| ||||||   |||||||||| |||||||||||    
T  3527049 ttcaatcttcaactaattaccaagcacaatcgtgggattcatcaacaaaacctcatgcatgaggcttggttttccc 3526974  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 12772188 - 12772146
Alignment:
Q  76 tcaagtagtttaatggttagaaatcactttttaagatgaataa 118  Q
    |||||||||||||||||||||| |||| ||||||| |||||||    
T  12772188 tcaagtagtttaatggttagaattcaccttttaaggtgaataa 12772146  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 9007773 - 9007854
Alignment:
Q  81 tagtttaatggttagaaatcacttttt-aagatgaataaatgagttgtttggagttcgaaccaaaaccctacctataacaat 161  Q
    ||||||| ||| ||||| ||||||||| ||| |||||||||||| |||| || ||||||| |  |||||||| |||||||||    
T  9007773 tagtttattggctagaattcactttttcaaggtgaataaatgagatgttcggggttcgaatcccaaccctacatataacaat 9007854  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 15381849 - 15381894
Alignment:
Q  76 tcaagtagtttaatggttagaaatcactttttaagatgaataaatg 121  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||    
T  15381849 tcaaatagtttaatgattagaattcactttttaagataaataaatg 15381894  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 44622808 - 44622853
Alignment:
Q  72 ttgatcaagtagtttaatggttagaaatcactttttaagatgaata 117  Q
    ||||||||||||| |||| ||||||| | |||||||||||||||||    
T  44622808 ttgatcaagtagtataattgttagaatttactttttaagatgaata 44622853  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 52363060 - 52363015
Alignment:
Q  146 ccctacctataacaattcattatttctgtcaactgagttatgttca 191  Q
    |||||| ||||||||| |||||||||||||||||||  ||||||||    
T  52363060 ccctacatataacaatgcattatttctgtcaactgaactatgttca 52363015  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 924333 - 924425
Alignment:
Q  99 tcactttttaagatgaataaatgagttgtttggagttcgaaccaaaaccctacctataacaattcattatttctgtcaactgagttatgttca 191  Q
    |||||||||||| |||||||||||  ||||  | |||||||||  | ||||   ||||||||| |||||| ||||||||||||| ||||||||    
T  924333 tcactttttaaggtgaataaatgaaatgttcagggttcgaaccttatccctgtatataacaatacattatctctgtcaactgagatatgttca 924425  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 4045052 - 4045112
Alignment:
Q  81 tagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaacc 141  Q
    ||||||||| ||||||| |||||||||||  ||||||| || | ||||||| |||||||||    
T  4045052 tagtttaattgttagaattcactttttaaagtgaataagtggggtgtttggggttcgaacc 4045112  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 55195845 - 55195904
Alignment:
Q  81 tagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaac 140  Q
    |||| ||||||||| || |||| || ||||||||||||||||| |||| |||||||||||    
T  55195845 tagtctaatggttataattcaccttataagatgaataaatgaggtgttcggagttcgaac 55195904  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 34807886 - 34807844
Alignment:
Q  81 tagtttaatggttagaaatcactttttaagatgaataaatgag 123  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||    
T  34807886 tagtttaatggttagaattcattttttaagatgaataactgag 34807844  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 45199858 - 45199900
Alignment:
Q  76 tcaagtagtttaatggttagaaatcactttttaagatgaataa 118  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||    
T  45199858 tcaagtagtctaatggttagaattcactttttaaaatgaataa 45199900  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 4985875 - 4985833
Alignment:
Q  76 tcaagtagtttaatggttagaaatcactttttaagatgaataa 118  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||    
T  4985875 tcaagtagtctaatggatagaattcactttttaagatgaataa 4985833  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 12126238 - 12126327
Alignment:
Q  78 aagtagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaaccaaaaccctacctataacaattcattat 168  Q
    |||||||||| ||||||||| ||| |||| |||||||||||||||| | |||| ||||| || |  |||| ||| ||||||||| ||||||    
T  12126238 aagtagtttagtggttagaattcaatttt-aagatgaataaatgaggtatttgaagttcaaaacgcaaccgtacatataacaatgcattat 12126327  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 35149950 - 35149909
Alignment:
Q  99 tcactttttaagatgaataaatgagttgtttggagttcgaac 140  Q
    |||| ||||| |||||||||||||||||||||| ||||||||    
T  35149950 tcaccttttatgatgaataaatgagttgtttggggttcgaac 35149909  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 15126353 - 15126293
Alignment:
Q  81 tagtttaatggttagaaatcactttttaagatgaataaatgagttgtttggagttcgaacc 141  Q
    ||||||||||||||||| |||| || |||| |||||||||| | |||  ||||||||||||    
T  15126353 tagtttaatggttagaattcaccttataaggtgaataaatggggtgtccggagttcgaacc 15126293  T

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