View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_27 (Length: 515)
Name: NF16533_low_27
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 499
Target Start/End: Complemental strand, 43095176 - 43094709
Alignment:
| Q |
12 |
gaacctgtgatatatatcttgagagctagatgatttctttattgcctctttgttgtgtgtaaagactaaggattatattgttaaatagtaggtatttgga |
111 |
Q |
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| T |
43095176 |
gaacctgtgatatatatcttgagagctagatgatttctttattgcctctttattgtgcgtaaagactaaggattatattgttaaatagtagatatttgga |
43095077 |
T |
|
| Q |
112 |
ttcaattttagtagagtcaaaagtgattttgaagagttaaaattaattctaagttagaagttagaaattgcaatttagtctgcaaatttgatttcaaaat |
211 |
Q |
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| T |
43095076 |
ttcaattttagtagagtcaaaagtgattttgaagagttaaaattaattctaagttagaagttagaaatttcaatttagtctgcaaatttgatttcaacat |
43094977 |
T |
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| Q |
212 |
ttaaatttattgttcgagtttcacattgcataa------aatattgtaacataaagtcacttctaattaaaatcaattttacgaaatcaatttttgattt |
305 |
Q |
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| T |
43094976 |
ttaaatttattgttcaagtttcacattacataaaacattaacattgtaacataaagtcacttctaacta--------------aaatcaatttttgatgt |
43094891 |
T |
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| Q |
306 |
gatagaataaaacacagttagcaatagtaggtatttaaatagagaattgtaataaatcctatagagctgtctaaacacagttgtggggaattgacttttg |
405 |
Q |
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| T |
43094890 |
gatagaataaaacacagttagcaatagtaggtatttaaatagagaattgtgataaatcctatagagctgtctaaacacagttgtggggaattgac----- |
43094796 |
T |
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| Q |
406 |
catgtgtttttgctaacagcggggtggataagatatcatgacacagtcttgttcctgccccacccttcctctatcaatggctccaccttctttt |
499 |
Q |
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| T |
43094795 |
-------ttttgctaacagcggggtggataagatatcatgacacagtcttgttcctgccccacccttcctctatcaatggctccaccttctttt |
43094709 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 35728845 - 35728892
Alignment:
| Q |
108 |
tggattcaattttagtagagtcaaaagtgattttgaagagttaaaatt |
155 |
Q |
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| T |
35728845 |
tggattcacttttggaagagtcaaaagtgattttgaagaattaaaatt |
35728892 |
T |
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