View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_28 (Length: 510)
Name: NF16533_low_28
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 43 - 503
Target Start/End: Original strand, 44737890 - 44738349
Alignment:
| Q |
43 |
tttattctatccatcaacaaggagtgataatttttaaaattttatttacttatttcctcaaaatgattataaatannnnnnnngaatttattaatgtgtt |
142 |
Q |
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| T |
44737890 |
tttattctatccatcaacaaggagtgataatttttaaaattttatttacttatttcctcaaaatgattataaatattttttttgaatttattaatgtgtt |
44737989 |
T |
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| Q |
143 |
tccggtctagaactcaagttcacaacaatgatgacggatctccgaaagagatttcttgaaacggtgcttttagttcggattctacattggagacgattct |
242 |
Q |
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| T |
44737990 |
ttcggtctagaactcaagttcacaacaatgatgacggatctccgaaagagatttcttgaaacggtgcttttagttcggattctacattgaagacgattct |
44738089 |
T |
|
| Q |
243 |
ctatgaagtgtatcagcaaacactttgacaatgactttgtgtcagaatctacaattgtttgtttatattttatgattctttttatatttaaaggaaaatg |
342 |
Q |
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| T |
44738090 |
ctatgaagtgtattagcaaacactttgacaatgactttgtgtcagaatctacaattatttgtttatattttatgattctttttatatttaaaggaaaatg |
44738189 |
T |
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| Q |
343 |
ctaatatatgtgttttaaggaaataaaatagtgaatcaaatatagaaaatttgagtgatgagaattgtacattcaacttcnnnnnnnagtttagatttgt |
442 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44738190 |
ctaatatatgtgttttaaggaaataaaata-tgaatcaaatatagaaaatttgagtgatgagaattgtacattcaacttctttttttagtttagatttgt |
44738288 |
T |
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| Q |
443 |
taaaaacattgatactacttttggaggaggcaaattttattatagaaatgcagaattatct |
503 |
Q |
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| T |
44738289 |
taaaaacattgatactacttttggaggaggcaaattttattatagaaatgcagaattatct |
44738349 |
T |
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