View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_29 (Length: 510)
Name: NF16533_low_29
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 15228464 - 15228037
Alignment:
| Q |
1 |
gctgagtatgttaaagttagtaatgatattcctgatccaagtattgtcaaagattttgcagtcaagaacttcattgaggtggatgagtatgttcaatcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15228464 |
gctgagtatgttaaagttagtaatgatattcctgatccaagtattgtcaaaaattttgcagtcaagaacttcattgaggtggatgagtatgttcaatcac |
15228365 |
T |
|
| Q |
101 |
ttgctgcatagaagtttaatgagttgaatgacaagctagtattttaataaatgtattgttacataatgtggttgaataatggaaccgtttcctatttaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15228364 |
ttgctgcatagaagtttaatgagttgaatgacaagctagtattttaataaatgtattgttacataatgtggttgaataatggaaccgtttcctatttaat |
15228265 |
T |
|
| Q |
201 |
gtgatctatgtagtaatgagcttgtcctttgcctttgttattgttggcttaatgaattattgtactatctcctctttaattgtta-tgatctaaatttca |
299 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||| | |
|
|
| T |
15228264 |
gtgatctatttagtaatgagcttgtcc------tttgttattgttggcttaat--attattgtactatgtcctctttcattgttattgatctaaatttaa |
15228173 |
T |
|
| Q |
300 |
ggataatggaagtattatgtgatcatcatttcatcttcttgcattgcaaaacattgctttagagtttagacactggtatctatcaaaatctgatttggat |
399 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15228172 |
tgagaatggaagtattatgtgatcatcatttcatcttcttgcattgcaaaacattgctttagagtttagacactggtatctatcaaaatctgatttggat |
15228073 |
T |
|
| Q |
400 |
ccctacactgtatcaaaattgaatgactctgcagca |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15228072 |
ccctacactgtatcaaaatttaatgactctgcagca |
15228037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 496
Target Start/End: Complemental strand, 15227998 - 15227904
Alignment:
| Q |
404 |
acactgtatcaaaattgaatgactctgca--gcagctgcattatgttgttagttaaacaattactatttgtcagaactcaagagtgtcacccatg |
496 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15227998 |
acactgaatcaaaatttaatgagtctgcatagaagctgcattatgttgttagttaaacaattactatttgtcagaactcaagagtgtcacccatg |
15227904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University