View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_30 (Length: 507)
Name: NF16533_low_30
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 51224679 - 51225092
Alignment:
| Q |
19 |
ttctaagtattttggtgtctgtgctattaacaagcctaagaaggatttcataaactatttgtagatgtgaccataaaggtgaaaatatggaaataggatc |
118 |
Q |
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| T |
51224679 |
ttctaagtattttggtgtctgtgctattaacaagcctaagaaggatttcataaactatttgtagatgtgaccataaaggtgaaaatatggaaataggatc |
51224778 |
T |
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| Q |
119 |
ttcttcatcaagaaattctgatatagctgaaggatttgtaggtggaggaagtggcctgaaaagattggctttgatcattgatactaaaggtcttaaaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224779 |
ttcttcatcaagaaattctgatatagctgaaggatttgtaggtggaggaagtggcctgaaaagattggctttgatcattgatactaaaggtcttaaaact |
51224878 |
T |
|
| Q |
219 |
ttctcatggactggnnnnnnngaggatttcatcatagcaatgagccttgaaagttgaagtcttttagagtctctttgtgcaggggattctgaagggtcag |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224879 |
ttctcatggactggtttttttgaggatttcatcatagcaatgagccttgaaagttgaagtcttttagagtctctttgtgcaggggattctgaagggtcag |
51224978 |
T |
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| Q |
319 |
tgaaggtgaaaacaaaggtgcagtaagaaacagtagagagaatttcttcatttcctgaagtaggagaagatggtattgaaaaaagaggcttttcttgcac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51224979 |
tgaaggtgaaaacaaaggtgcagtaagaaacagtagagagaatttcttcatttcctgaagtaggagaagatggtattgaaaaaagaggcttttcttgcac |
51225078 |
T |
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| Q |
419 |
aaaaaattcttgaa |
432 |
Q |
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| T |
51225079 |
aaaaaattcatgaa |
51225092 |
T |
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