View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_31 (Length: 497)
Name: NF16533_low_31
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 29518607 - 29519056
Alignment:
| Q |
17 |
aaaaaatactcaaaatttgtgtcacaaatggcaaccaaataaattatgatattatggatcgtttttgaaacactccataccaagatgatttgttgcaaac |
116 |
Q |
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| T |
29518607 |
aaaaattacacaaaatttgtgtcacaaatggcaaccaaataaattatgatattatggatcgtttttgaaacactccataccaagatgatttgttgcaaac |
29518706 |
T |
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| Q |
117 |
tgcatctcaattccatcttgtgtcagttggaaggggcagaacataactccagcattgtttctgaaaatcaaaaagccaattatgtcgttaattaagtcgc |
216 |
Q |
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| T |
29518707 |
tgcatctcaattccatcttgtgtcagttggaaggggcagaacataactccagcattgtttctgaaaatcaaaa-gccaattatgtcg------------c |
29518793 |
T |
|
| Q |
217 |
tatttggaatacactagcgtatcaactccgtggtaagaatttgacacagttttaataatcacttcagctttagtattagttaattgataaaacacggtta |
316 |
Q |
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| T |
29518794 |
tatttggaatacactagcgtatcaactccgtggtaagaatttgacacagttttaataatcac-----ctttagtattagttaattgataaaacactgtta |
29518888 |
T |
|
| Q |
317 |
aaatgaaaagaagaggatgatgaacatacattaagatgttgagaggaagatcgagagcgaggaagttttcaacaaacgatctaacagacttcactgaaca |
416 |
Q |
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| T |
29518889 |
aaatgaaaagaagaggatgatcaacatacattaagatgttgagaggaagatcgagagcgaggaagttttcaacaaacgatctaacagacttcactgaaca |
29518988 |
T |
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| Q |
417 |
aaggtcgagcttcattatgtcaactcgagcagactcgttgtcttggagtataatttgtttagcttcct |
484 |
Q |
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| T |
29518989 |
aaggtcgagcttcattatgtcaactcgagcagactcgttgtcttgtagtataatttgtttagcttcct |
29519056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 40101687 - 40101601
Alignment:
| Q |
94 |
taccaagatgatttgttgcaaactgcatctcaattccatcttgtgtcagttggaaggggcagaacataactccagcattgtttctga |
180 |
Q |
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|||||||||| ||||||||||| |||||||||||||| || | || | || ||||||||||||||| | ||||||||||||||||| |
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| T |
40101687 |
taccaagatggtttgttgcaaattgcatctcaattccctcctctgagattttgaaggggcagaacattattccagcattgtttctga |
40101601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 449
Target Start/End: Complemental strand, 40101112 - 40101002
Alignment:
| Q |
339 |
aacatacattaagatgttgagaggaagatcgagagcgaggaagttttcaacaaacgatctaacagacttcactgaacaaaggtcgagcttcattatgtca |
438 |
Q |
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| T |
40101112 |
aacaaacattaagatgttgagaggaagatcaagagcaatgaagttgtcgacgaatgatcggacagactttgttgagcataggtcaagtttcattatgtcc |
40101013 |
T |
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| Q |
439 |
actcgagcaga |
449 |
Q |
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| T |
40101012 |
actcgtgcaga |
40101002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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