View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_32 (Length: 497)

Name: NF16533_low_32
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_32
NF16533_low_32
[»] chr3 (14 HSPs)
chr3 (8-460)||(2820903-2821354)
chr3 (255-450)||(2809624-2809828)
chr3 (238-311)||(2761632-2761705)
chr3 (401-442)||(2799725-2799766)
chr3 (278-331)||(2793422-2793475)
chr3 (61-154)||(2809970-2810063)
chr3 (406-455)||(2761565-2761614)
chr3 (53-152)||(2800402-2800501)
chr3 (401-460)||(2836337-2836396)
chr3 (53-87)||(2771782-2771816)
chr3 (260-330)||(2773460-2773530)
chr3 (282-352)||(2771531-2771605)
chr3 (70-147)||(2835080-2835157)
chr3 (401-449)||(2792671-2792719)
[»] chr1 (2 HSPs)
chr1 (238-333)||(11114997-11115092)
chr1 (53-155)||(11114761-11114863)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Complemental strand, 2821354 - 2820903
Alignment:
Q  8 agagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccagaaataccccctgattacaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2821354 agagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccagaaataccccc-gattacaaga 2821256  T
Q  108 ttttgagtcaaagcttctccaaccaaattatacaacaccacaaatgacnnnnnnnnnnnngaagccagagtcgctcagtgaacgggatccactttttgct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||| |||||||||||||||||    
T  2821255 ttttgagtcaaagcttctccaaccaaattatacaacaccacaaatgacaaaaagaaaaaagaagccacagtcgctcagtgaatgggatccactttttgct 2821156  T
Q  208 gattattgcaggatgagtggaaatattttactttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatct 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2821155 gattattgcaggatgagaggaaatattttactttgagctgtatcgtggagaaccaaattgctgtccgcattgacacaagaaacaatcaagtcagttatct 2821056  T
Q  308 catagaattgtcaacttaattaaacacactaaatctttttcaaaagaaaacgaaacatataaaataaaacgtcgatataaaactgaatgctttataagag 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2821055 catagaattgtcaacttaattaaacacactaaatctttttcaaaagaaaatgaaacatataaaataaaacgttgatataaaactgaatgctttataagag 2820956  T
Q  408 aagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgcaagac 460  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2820955 aagcattgcatgatcagaggaaaggtaccttcatattttgaagcttgcaagac 2820903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 255 - 450
Target Start/End: Complemental strand, 2809828 - 2809624
Alignment:
Q  255 gagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaaga 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      ||| |||||||||||||| |||||||||||||||| |    
T  2809828 gagaaccaaatttctgtccgcattgacacaaaaaacaatcaagtcagttatctcatac-----tcagcttaattaaacacattaaatctttttcaaaaca 2809734  T
Q  355 aaacgaaacatataaaataaaacgtcgatataaaactgaatgct--------------ttataagagaagcattgcatgatcagaggaaaggtaccttca 440  Q
    ||| |||||| || |||| |||||||| ||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||    
T  2809733 aaatgaaacacattaaatgaaacgtcgttataaaactgaatgctagtacaagaatgctttataagagaagcattgcatgatcagaggaaaggtaccttca 2809634  T
Q  441 tattttgaag 450  Q
    ||||||||||    
T  2809633 tattttgaag 2809624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 2761705 - 2761632
Alignment:
Q  238 ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcata 311  Q
    |||||||||||||  |||||||||||||||||| || ||  ||||||||||| |||||||||||||||||||||    
T  2761705 ctttgagctgtattatggagaaccaaatttctggccacaccgacacaagaaaaaatcaagtcagttatctcata 2761632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 2799766 - 2799725
Alignment:
Q  401 ataagagaagcattgcatgatcagaggaaaggtaccttcata 442  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2799766 ataagagaagcattgcatgatcagaggaaaggtaccttcata 2799725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 2793475 - 2793422
Alignment:
Q  278 tgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaa 331  Q
    |||||| |||||||||  |||||||||||||||| |||||||||||||||||||    
T  2793475 tgacacgagaaacaatttagtcagttatctcatacaattgtcaacttaattaaa 2793422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 2810063 - 2809970
Alignment:
Q  61 caaaaagacgtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaatga 154  Q
    ||||| |||||| |||||||||| ||| ||||  | ||||||||||||||||| ||||| ||||  ||| ||||||||| |||||| |||||||    
T  2810063 caaaatgacgtccgaatggagtctagatatacgtcttgattacaagattttgaatcaaaacttccacaatcaaattataaaacacctcaaatga 2809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 2761614 - 2761565
Alignment:
Q  406 agaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgc 455  Q
    ||||||||| ||||||| || |||||||||||||||||||||||| ||||    
T  2761614 agaagcattacatgatcggatgaaaggtaccttcatattttgaagcttgc 2761565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 2800501 - 2800402
Alignment:
Q  53 agaaatatcaaaaagacgtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaat 152  Q
    |||||| || ||| || |||||||||||||||| | |||   | |||||||||| |||||| ||||||||||   ||| |||||||| ||||||||||||    
T  2800501 agaaatgtccaaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaagcttccaaaactaaattataaaacaccacaaat 2800402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Original strand, 2836337 - 2836396
Alignment:
Q  401 ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgcaagac 460  Q
    ||||||||||||||||  |||||||||| |||||||||| | |||||||| |||| ||||    
T  2836337 ataagagaagcattgcgcgatcagaggagaggtaccttcttgttttgaagcttgctagac 2836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 2771816 - 2771782
Alignment:
Q  53 agaaatatcaaaaagacgtctgaatggagtccaga 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  2771816 agaaatatcaaaacgacgtctgaatggagtccaga 2771782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 2773530 - 2773460
Alignment:
Q  260 ccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaa 330  Q
    ||||||| |||||| ||||| |||||||||||||| | |||| ||||||||| | ||| ||| ||||||||    
T  2773530 ccaaattgctgtccacattggcacaagaaacaatcgactcaggtatctcatacatttgccaatttaattaa 2773460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 2771605 - 2771531
Alignment:
Q  282 acaagaaacaatcaagtcagttatctcatagaattgtc----aacttaattaaacacactaaatctttttcaaaa 352  Q
    ||||||||||||  | |||||||||||||| |||||||    |||||||||||||||   |||||||||||||||    
T  2771605 acaagaaacaatttactcagttatctcatacaattgtcggtcaacttaattaaacacgtcaaatctttttcaaaa 2771531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 2835080 - 2835157
Alignment:
Q  70 gtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacacca 147  Q
    |||||||||||||||||| |||   | || ||||||| |||||| ||||||||||   |||||||||||| |||||||    
T  2835080 gtctgaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttccagaaccaaattataaaacacca 2835157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 2792719 - 2792671
Alignment:
Q  401 ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaa 449  Q
    ||||||||||  ||| |||||||||||||||| |||||||| |||||||    
T  2792719 ataagagaagtgttgaatgatcagaggaaaggcaccttcatcttttgaa 2792671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 11114997 - 11115092
Alignment:
Q  238 ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaaca 333  Q
    |||||||| ||||| | ||||||| || ||||||||  ||| | ||||||||||||  |||||||||||||||| ||||||||||| |||||||||    
T  11114997 ctttgagcggtatcattgagaacccaaattctgtccaaatttatacaagaaacaattgagtcagttatctcatacaattgtcaactaaattaaaca 11115092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 11114761 - 11114863
Alignment:
Q  53 agaaatatcaaaaagacgtctgaatggagtccagaaataccccctgattacaagattttgagtcaaagcttctccaaccaaattatacaacaccacaaat 152  Q
    |||||| |||||| ||| | |||||||| ||||||||||   | |||||||||| |||||| || ||| |||  ||||||||||||| ||||||||||||    
T  11114761 agaaatgtcaaaatgacatgtgaatggaatccagaaataggtcttgattacaaggttttgaatcgaagtttccacaaccaaattataaaacaccacaaat 11114860  T
Q  153 gac 155  Q
    |||    
T  11114861 gac 11114863  T

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