View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_37 (Length: 476)

Name: NF16533_low_37
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_37
NF16533_low_37
[»] chr4 (4 HSPs)
chr4 (78-458)||(41497222-41497602)
chr4 (122-238)||(41491033-41491149)
chr4 (161-241)||(41483226-41483306)
chr4 (13-57)||(41497154-41497198)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 78 - 458
Target Start/End: Original strand, 41497222 - 41497602
Alignment:
Q  78 aaagaaaaccaactaatataatctatgtaaccttttataatgtgaattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcata 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41497222 aaagaaaaccaactaatataatctatgtaaccttttataatgtgaattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcata 41497321  T
Q  178 cagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcat 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41497322 cagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcat 41497421  T
Q  278 atatatcatatcagatgagaaaggaaatggagtttcttcttctatggccctgtattaggattcactaattcagactacataggagaattggatttgaaac 377  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41497422 atatatcatatcatatgagaaaggaaatggagtttcttcttctatggccctgtattaggattcactaattcagactacataggagaattggatttgaaac 41497521  T
Q  378 aaaggaaatagtaaaaataaacataaaagaacacaatttcaggattagttactcgtgtaccgtattttcttgcaccctgat 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  41497522 aaaggaaatagtaaaaataaacataaaagaacacaatttcaggattagatactcgtgtgccgtattttcttgcaccctgat 41497602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 41491033 - 41491149
Alignment:
Q  122 aattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttcca 221  Q
    ||||| || ||||||||||||| ||  |||||||| || |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  41491033 aattacattaggtgaattgggacctaatgaagagatatgtggtgcctctgctcattcagattatggcatgatcactctcctattaaccaacggtgttcca 41491132  T
Q  222 ggactgcaggttctcat 238  Q
    |||||||||||||||||    
T  41491133 ggactgcaggttctcat 41491149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 41483226 - 41483306
Alignment:
Q  161 tggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatctt 241  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||| ||||||    
T  41483226 tggtgcctctgctcattcagattatggcatgatcactctcctaatcaccaatggtgttccaggactacaggttcacatctt 41483306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 41497154 - 41497198
Alignment:
Q  13 attattctaaagttttttctgccgtactttattagtagagtcaag 57  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  41497154 attaatctaaagttttttctgccgtactttattagtagagtcaag 41497198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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